.gitignore
.readthedocs.yml
CITATION.cff
CONTRIBUTING.md
COPYING
MANIFEST.in
README.md
codemeta.json
pyproject.toml
setup.py
examples/ROItoReference.py
examples/__init__.py
examples/compileResults.py
examples/limitedOPDSigma.py
examples/opdExampleScript.py
examples/positionTransformation.py
examples/roiUsageExample.py
examples/runPWSAnalysis.py
examples/syntheticReference.py
examples/findOPDSurface/__init__.py
examples/findOPDSurface/activeContour/__init__.py
examples/findOPDSurface/activeContour/activeContour.py
examples/findOPDSurface/activeContour/funcs.py
paper/paper.bib
paper/paper.md
paper/figs/Doc1.docx
paper/figs/analysis_inherit.png
paper/figs/cell54_opd.png
paper/figs/cell54_reflect_k=10.png
paper/figs/cell54_reflectance.png
paper/figs/cell54_reflectance_single.png
paper/figs/cell54_rms.png
paper/figs/dtype_inherit.png
paper/figs/er_corrected.png
paper/figs/er_grid.png
paper/figs/er_spectrum.png
paper/figs/er_uncorrected.png
paper/figs/gridcells.png
src/pwspy/__init__.py
src/pwspy/version.py
src/pwspy.egg-info/PKG-INFO
src/pwspy.egg-info/SOURCES.txt
src/pwspy.egg-info/dependency_links.txt
src/pwspy.egg-info/requires.txt
src/pwspy.egg-info/top_level.txt
src/pwspy/analysis/__init__.py
src/pwspy/analysis/_abstract.py
src/pwspy/analysis/_utility.py
src/pwspy/analysis/dynamics.py
src/pwspy/analysis/pws.py
src/pwspy/analysis/warnings.py
src/pwspy/analysis/_resources/defaultAnalysisSettings/NanoCytomics_analysis.json
src/pwspy/analysis/_resources/defaultAnalysisSettings/OPD Filter_analysis.json
src/pwspy/analysis/_resources/defaultAnalysisSettings/Recommended_analysis.json
src/pwspy/analysis/compilation/__init__.py
src/pwspy/analysis/compilation/_abstract.py
src/pwspy/analysis/compilation/_dynamics.py
src/pwspy/analysis/compilation/_generic.py
src/pwspy/analysis/compilation/_pws.py
src/pwspy/dataTypes/__init__.py
src/pwspy/dataTypes/_data.py
src/pwspy/dataTypes/_metadata.py
src/pwspy/dataTypes/_other.py
src/pwspy/dataTypes/jsonSchemas/DynMetaData.json
src/pwspy/dataTypes/jsonSchemas/MetaDataBase.json
src/pwspy/dataTypes/jsonSchemas/PwsMetaData.json
src/pwspy/utility/__init__.py
src/pwspy/utility/fileIO.py
src/pwspy/utility/fluorescence.py
src/pwspy/utility/machineVision.py
src/pwspy/utility/misc.py
src/pwspy/utility/DConversion/__init__.py
src/pwspy/utility/DConversion/_matlabBridge.py
src/pwspy/utility/DConversion/legacyMatlabCode/SigmaToD.m
src/pwspy/utility/DConversion/legacyMatlabCode/SigmaToD_coefs.mat
src/pwspy/utility/DConversion/legacyMatlabCode/acf_1.m
src/pwspy/utility/DConversion/legacyMatlabCode/acfd.m
src/pwspy/utility/DConversion/legacyMatlabCode/test.m
src/pwspy/utility/acquisition/__init__.py
src/pwspy/utility/acquisition/_treeItem.py
src/pwspy/utility/acquisition/sequencerCoordinate.py
src/pwspy/utility/acquisition/steps.py
src/pwspy/utility/micromanager/PropertyMap.py
src/pwspy/utility/micromanager/__init__.py
src/pwspy/utility/micromanager/images.py
src/pwspy/utility/micromanager/positions.py
src/pwspy/utility/plotting/__init__.py
src/pwspy/utility/plotting/roiColor.py
src/pwspy/utility/reflection/__init__.py
src/pwspy/utility/reflection/extraReflectance.py
src/pwspy/utility/reflection/multilayerReflectanceEngine.py
src/pwspy/utility/reflection/reflectanceHelper.py
src/pwspy/utility/reflection/refractiveIndexFiles/CargilleOil1_4.csv
src/pwspy/utility/reflection/refractiveIndexFiles/CargilleOil1_7.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Cargille_cauchy_equations.xls
src/pwspy/utility/reflection/refractiveIndexFiles/Ciddor.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Daimon-21.5C.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Konig.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Moutzouris.csv
src/pwspy/utility/reflection/refractiveIndexFiles/N-BK7.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Rheims.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Sani-DellOro-IPA.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Silicon.csv
src/pwspy/utility/thinFilmInterferenceFiles/1um_air_silica_silicon.txt
src/pwspy/utility/thinFilmInterferenceFiles/2um_sio2_ITO_air.txt
tests/conftest.py
tests/test_analysis.py
tests/test_rois.py
tests/test_utility.py
tests/resources/readme.txt