.gitignore
.readthedocs.yml
CONTRIBUTING.md
COPYING
MANIFEST.in
README.md
deprecated_bitbucket-pipelines.yml
pyproject.toml
setup.py
examples/ROItoReference.py
examples/__init__.py
examples/compileResults.py
examples/limitedOPDSigma.py
examples/opdExampleScript.py
examples/positionTransformation.py
examples/roiUsageExample.py
examples/runPWSAnalysis.py
examples/syntheticReference.py
examples/findOPDSurface/__init__.py
examples/findOPDSurface/activeContour/__init__.py
examples/findOPDSurface/activeContour/activeContour.py
examples/findOPDSurface/activeContour/funcs.py
examples/findOPDSurface/peakDetection/__init__.py
examples/findOPDSurface/peakDetection/findOPDSurface.py
examples/findOPDSurface/peakDetection/funcs.py
src/pwspy/__init__.py
src/pwspy/version.py
src/pwspy.egg-info/PKG-INFO
src/pwspy.egg-info/SOURCES.txt
src/pwspy.egg-info/dependency_links.txt
src/pwspy.egg-info/requires.txt
src/pwspy.egg-info/top_level.txt
src/pwspy/analysis/__init__.py
src/pwspy/analysis/_abstract.py
src/pwspy/analysis/_utility.py
src/pwspy/analysis/dynamics.py
src/pwspy/analysis/pws.py
src/pwspy/analysis/warnings.py
src/pwspy/analysis/_resources/defaultAnalysisSettings/NanoCytomics_analysis.json
src/pwspy/analysis/_resources/defaultAnalysisSettings/OPD Filter_analysis.json
src/pwspy/analysis/_resources/defaultAnalysisSettings/Recommended_analysis.json
src/pwspy/analysis/compilation/__init__.py
src/pwspy/analysis/compilation/_abstract.py
src/pwspy/analysis/compilation/_dynamics.py
src/pwspy/analysis/compilation/_generic.py
src/pwspy/analysis/compilation/_pws.py
src/pwspy/analysis/examples/Whole_Slide_PWS_Analysis.m
src/pwspy/analysis/examples/__init__.py
src/pwspy/analysis/examples/dynamics/__init__.py
src/pwspy/analysis/examples/dynamics/_matlabTranslations/RMS_T_General.py
src/pwspy/analysis/examples/dynamics/_matlabTranslations/__init__.py
src/pwspy/analysis/examples/dynamics/_matlabTranslations/autoCorr2019.py
src/pwspy/analysis/examples/dynamics/_matlabTranslations/compileDynamics.py
src/pwspy/analysis/examples/dynamics/_matlabTranslations/timeseries2imagecube_general.py
src/pwspy/analysis/examples/dynamics/_oldMatlab/RMS_T_General.m
src/pwspy/analysis/examples/dynamics/_oldMatlab/autoCorr2019.m
src/pwspy/analysis/examples/dynamics/_oldMatlab/compileDynamics.m
src/pwspy/analysis/examples/dynamics/_oldMatlab/readme.txt
src/pwspy/analysis/examples/dynamics/_oldMatlab/timeseries2imagecube_general.m
src/pwspy/dataTypes/__init__.py
src/pwspy/dataTypes/_data.py
src/pwspy/dataTypes/_metadata.py
src/pwspy/dataTypes/_other.py
src/pwspy/dataTypes/jsonSchemas/DynMetaData.json
src/pwspy/dataTypes/jsonSchemas/MetaDataBase.json
src/pwspy/dataTypes/jsonSchemas/PwsMetaData.json
src/pwspy/utility/__init__.py
src/pwspy/utility/fileIO.py
src/pwspy/utility/fluorescence.py
src/pwspy/utility/machineVision.py
src/pwspy/utility/misc.py
src/pwspy/utility/DConversion/__init__.py
src/pwspy/utility/DConversion/_matlabBridge.py
src/pwspy/utility/DConversion/legacyMatlabCode/SigmaToD.m
src/pwspy/utility/DConversion/legacyMatlabCode/SigmaToD_coefs.mat
src/pwspy/utility/DConversion/legacyMatlabCode/acf_1.m
src/pwspy/utility/DConversion/legacyMatlabCode/acfd.m
src/pwspy/utility/DConversion/legacyMatlabCode/test.m
src/pwspy/utility/acquisition/__init__.py
src/pwspy/utility/acquisition/_treeItem.py
src/pwspy/utility/acquisition/sequencerCoordinate.py
src/pwspy/utility/acquisition/steps.py
src/pwspy/utility/micromanager/PropertyMap.py
src/pwspy/utility/micromanager/__init__.py
src/pwspy/utility/micromanager/images.py
src/pwspy/utility/micromanager/positions.py
src/pwspy/utility/plotting/__init__.py
src/pwspy/utility/plotting/roiColor.py
src/pwspy/utility/reflection/__init__.py
src/pwspy/utility/reflection/extraReflectance.py
src/pwspy/utility/reflection/multilayerReflectanceEngine.py
src/pwspy/utility/reflection/reflectanceHelper.py
src/pwspy/utility/reflection/refractiveIndexFiles/CargilleOil1_4.csv
src/pwspy/utility/reflection/refractiveIndexFiles/CargilleOil1_7.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Cargille_cauchy_equations.xls
src/pwspy/utility/reflection/refractiveIndexFiles/Ciddor.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Daimon-21.5C.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Konig.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Moutzouris.csv
src/pwspy/utility/reflection/refractiveIndexFiles/N-BK7.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Rheims.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Sani-DellOro-IPA.csv
src/pwspy/utility/reflection/refractiveIndexFiles/Silicon.csv
src/pwspy/utility/thinFilmInterferenceFiles/1um_air_silica_silicon.txt
src/pwspy/utility/thinFilmInterferenceFiles/2um_sio2_ITO_air.txt
tests/conftest.py
tests/test_analysis.py
tests/test_rois.py
tests/test_utility.py
tests/resources/readme.txt