"""Core data structures and utilities."""

from pulchra.core.structures import Atom, Residue, Molecule
from pulchra.core.constants import (
    AA_NAMES,
    SHORT_AA_NAMES,
    NHEAVY,
    HEAVY_ATOMS,
    BACKBONE_ATOMS,
    FLAG_BACKBONE,
    FLAG_CALPHA,
    FLAG_SIDECHAIN,
    FLAG_SCM,
)
from pulchra.core.geometry import (
    calc_distance,
    calc_r14,
    superimpose,
    normalize,
    calc_torsion,
)

__all__ = [
    "Atom",
    "Residue",
    "Molecule",
    "AA_NAMES",
    "SHORT_AA_NAMES",
    "NHEAVY",
    "HEAVY_ATOMS",
    "BACKBONE_ATOMS",
    "FLAG_BACKBONE",
    "FLAG_CALPHA",
    "FLAG_SIDECHAIN",
    "FLAG_SCM",
    "calc_distance",
    "calc_r14",
    "superimpose",
    "normalize",
    "calc_torsion",
]
