Metadata-Version: 2.1
Name: pubmad
Version: 0.18
Summary: Useful tools to work with biology
Home-page: https://github.com/Pier297/ProgettoBIO
Author: Jacopo Bandoni, Pier Paolo Tarasco, William Simoni, Marco Natali
Author-email: bandoni.jacopo@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: biopython
Requires-Dist: certifi
Requires-Dist: charset-normalizer
Requires-Dist: click
Requires-Dist: cycler
Requires-Dist: filelock
Requires-Dist: fonttools
Requires-Dist: huggingface-hub
Requires-Dist: idna
Requires-Dist: joblib
Requires-Dist: kiwisolver
Requires-Dist: matplotlib
Requires-Dist: networkx
Requires-Dist: nltk
Requires-Dist: numpy
Requires-Dist: packaging
Requires-Dist: Pillow
Requires-Dist: pymed
Requires-Dist: pyparsing
Requires-Dist: python-dateutil
Requires-Dist: PyYAML
Requires-Dist: regex
Requires-Dist: requests
Requires-Dist: sacremoses
Requires-Dist: six
Requires-Dist: tokenizers
Requires-Dist: torch
Requires-Dist: tqdm
Requires-Dist: transformers
Requires-Dist: typing-extensions
Requires-Dist: urllib3pyvis

# ProgettoBIO

## To run the server

> export FLASK_APP=server

> flask run

Then head over to the react client (https://github.com/Pier297/BioSearch)
and execute:

> npm start

## OBIETTIVI:
- fixare pymed!
- aggiungere pesi agli edges
- visualizzazione con dash (mettere archi più o meno grossi a seconda del peso, link sugli archi)
- algoritmi di centralità e communities (già integrati in network x)
- migliorare throttler
- Aggiungere biobert QA


Secondario:
- [EFFICIENZA] Per estrarre le relazioni converrebbe chiamare il modello in batch e non una singola frase alla volta
- In qualche modo pulire la cache
- Vedere pacchetto pip e caricare su hugginface (o drive) i pesi del modello di biobert REL




