Metadata-Version: 2.1
Name: ptrc
Version: 0.0.1
Summary: In Vitro Fertilization
Home-page: https://github.com/dsm-72/ptrc
Author: dsm-72
Author-email: sumner.magruder@yale.edu
License: Apache Software License 2.0
Keywords: in vitro fertilization ptrc
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.11
Classifier: License :: OSI Approved :: Apache Software License
Requires-Python: >=3.11
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: atyp
Requires-Dist: nchr
Requires-Dist: nlit
Requires-Dist: pfmt
Requires-Dist: pstr
Requires-Dist: psrc
Requires-Dist: chck
Requires-Dist: xath
Requires-Dist: nbic
Requires-Dist: asto
Requires-Dist: atup
Requires-Dist: mstar
Requires-Dist: calr
Requires-Dist: fpos
Requires-Dist: ston
Requires-Dist: pttn
Requires-Dist: putl
Provides-Extra: dev
Requires-Dist: numpy; extra == "dev"
Requires-Dist: pandas; extra == "dev"
Requires-Dist: matplotlib; extra == "dev"
Requires-Dist: cv2; extra == "dev"
Requires-Dist: PIL; extra == "dev"
Requires-Dist: torch; extra == "dev"
Requires-Dist: pytorch_lightning; extra == "dev"
Requires-Dist: torchvision; extra == "dev"

# ptrc

<!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! -->

## Developer Guide

### Setup

``` sh
# create conda environment
$ mamba env create -f env.yml

# update conda environment
$ mamba env update -n ptrc --file env.yml
```

### Install

``` sh
pip install -e .

# install from pypi
pip install ptrc
```

### nbdev

``` sh
# activate conda environment
$ conda activate ptrc

# make sure the ptrc package is installed in development mode
$ pip install -e .

# make changes under nbs/ directory
# ...

# compile to have changes apply to the ptrc package
$ nbdev_prepare
```

### Publishing

``` sh
# publish to pypi
$ nbdev_pypi

# publish to conda
$ nbdev_conda --build_args '-c conda-forge'
$ nbdev_conda --mambabuild --build_args '-c conda-forge -c dsm-72'
```

# Usage

## Installation

Install latest from the GitHub
[repository](https://github.com/dsm-72/ptrc):

``` sh
$ pip install git+https://github.com/dsm-72/ptrc.git
```

or from [conda](https://anaconda.org/dsm-72/ptrc)

``` sh
$ conda install -c dsm-72 ptrc
```

or from [pypi](https://pypi.org/project/ptrc/)

``` sh
$ pip install ptrc
```

## Documentation

Documentation can be found hosted on GitHub
[repository](https://github.com/dsm-72/ptrc)
[pages](https://dsm-72.github.io/ptrc/). Additionally you can find
package manager specific guidelines on
[conda](https://anaconda.org/dsm-72/ptrc) and
[pypi](https://pypi.org/project/ptrc/) respectively.
