Metadata-Version: 2.1
Name: psub
Version: 0.0.4a0
Summary: Submit array jobs to a SGE cluster without all the suffering
Home-page: https://github.com/udincer/psub
Author: Tev Dincer
Author-email: umutdincer@gmail.com
License: UNKNOWN
Description: # psub
        Submit array jobs without all the suffering
        
        Stands for petko-submit, OG ernstlab member who came up with the idea.
        
        ## New API (alpha):
        
        There's a new (unstable) API that allows submitting jobs directly in Python. 
        
        ## Installation:
        
        Must be installed under ~/utils like this:
        ```
        mkdir ~/utils; cd ~/utils
        git clone git@github.com:udincer/psub.git
        ```
        
        Add alias:
        ```
        # Optional: add psub as an alias
        # Add the following to .bashrc
        alias psub='/u/home/d/<your_username>/utils/psub/psub_main.sh '
        ```
        
        ## How to use:
        
        Make script containing each command you want to run in parallel in exactly one line:
        ```
        # the_jobs.sh
        python run_analysis.py theta1
        python run_analysis.py theta2
        python run_analysis.py theta3
        python run_analysis.py theta4
        python run_analysis.py theta5
        ```
        
        Run psub like this, will batch 3 commands to one SGE job (for short jobs):
        ```
        psub the_jobs.py 3
        ```
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/markdown
