import re
import warnings

from contextlib import contextmanager
from collections import deque, OrderedDict

from lxml import etree

from six import string_types as basestring, add_metaclass, text_type, PY3

from . import controlled_vocabulary
from .controlled_vocabulary import obj_to_xsdtype
from .validation import validate


def make_counter(start=1):
    '''
    Create a functor whose only internal piece of data is a mutable container
    with a reference to an integer, `start`. When the functor is called, it returns
    current `int` value of `start` and increments the mutable value by one.

    Parameters
    ----------
    start: int, optional
        The number to start counting from. Defaults to `1`.

    Returns
    -------
    int:
        The next number in the count progression.
    '''
    start = [start]

    def count_up():
        '''A closure returning incrementally larger integers'''
        ret_val = start[0]
        start[0] += 1
        return ret_val
    return count_up


def camelize(name):
    """Adapts an attribute name from "snake_case" to "camelCase"
    to make lookups on Element.attrib easier.

    Parameters
    ----------
    name : str
        Attribute name

    Returns
    -------
    str
        transformed name
    """
    parts = name.split("_")
    if len(parts) > 1:
        return ''.join([parts[0]] + [part.title() if part != "ref" else "_ref" for part in parts[1:]])
    else:
        return name


def id_maker(type_name, id_number):
    '''Generate a consistent ID that is unique within a document,
    assuming `id_number` is unique within the tag type.
    '''
    return "%s_%s" % (type_name.upper(), str(id_number))


def sanitize_id(string):
    """Remove characters from a string which would be invalid
    in XML identifiers

    Parameters
    ----------
    string : str

    Returns
    -------
    str
    """
    string = re.sub(r"\s", '_', string)
    string = re.sub(r"\\|/", '', string)
    return string


NO_TRACK = object()


class ElementType(type):
    """A metaclass to keep a count of the number of times
    an instance of each derived class is created.
    """
    _cache = {}

    def __new__(mcs, name, parents, attrs):
        new_type = type.__new__(mcs, name, parents, attrs)
        tag_name = attrs.get("tag_name")
        if attrs.get("_track") is NO_TRACK:
            return new_type
        if not hasattr(mcs, "_cache"):
            mcs._cache = dict()
        mcs._cache[name] = new_type
        if tag_name is not None:
            mcs._cache[tag_name] = new_type
        return new_type


def attrencode(o):
    """A simple function to convert most
    basic python types to a string form
    which is safe to serialize in XML
    attributes

    Parameters
    ----------
    o : object
        Attribute value to encode

    Returns
    -------
    str:
        The encoded value
    """
    if isinstance(o, bool):
        return text_type(o).lower()
    else:
        return text_type(o)


@add_metaclass(ElementType)
class TagBase(object):
    """Represent a single XML element with arbitrary attributes.

    Mocks the :class:`Mapping` interface

    Attributes
    ----------
    attrs : dict
        The attributes of the element. :meth:`__getattr__` falls back
        to querying :attr:`attrs`, trying both requested name and ``camelCase``
        versions of the name
    is_open : bool
        Whether the element has been opened as a context manager
    tag_name : str
        The name of the element
    text : str
        The body text of the element
    type_attrs : dict
        Attributes common to all elements of this type
    id : str
        The @id attribute of the element.
    """

    type_attrs = {}

    def __init__(self, tag_name=None, text="", **attrs):
        self.tag_name = tag_name or self.tag_name
        _id = attrs.pop('id', None)
        self.attrs = {}
        self.attrs.update(self.type_attrs)
        self.text = text
        self.attrs.update(attrs)
        # When passing through a XMLWriterMixin.element() call, tags may be reconstructed
        # and any set ids will be passed through the attrs dictionary, but the `with_id`
        # flag won't be propagated. `_force_id` preserves this.
        self._force_id = True
        if _id is None:
            self._id_number = None
            self._id_string = None
            self._force_id = False
        elif isinstance(_id, int):
            self._id_number = _id
            self._id_string = None
        else:
            self._id_number = None
            self._id_string = _id
        self.is_open = False

    def __getattr__(self, key):
        try:
            return self.attrs[key]
        except KeyError:
            try:
                return self.attrs[camelize(key)]
            except KeyError:
                raise AttributeError("%s has no attribute %s" % (self.__class__.__name__, key))

    # Support Mapping Interface
    def __getitem__(self, key):
        try:
            return getattr(self, key)
        except AttributeError:
            raise KeyError(key)

    def keys(self):
        if self.id is not None:
            yield "id"
        for key in self.attrs:
            yield key

    def get(self, name, default):
        return getattr(self, name, default)

    @property
    def id(self):
        if self._id_string is None and self._id_number is not None:
            self._id_string = id_maker(self.tag_name, self._id_number)
        return self._id_string

    def element(self, xml_file=None, with_id=False):
        """Create an XML element using either a materialized :class:`lxml.etree.Element`
        if ``xml_file`` is :const:`None` or the ephemeral context manager element
        :class:`lxml.etree._FileWriterElement`.

        The element will be constructed with all attributes in :attr:`attrs` where the
        value is not :const:`None`.

        Parameters
        ----------
        xml_file : :class:`XMLWriterMixin`, optional
            The XML writer to build the element for
        with_id : bool, optional
            Whether to require the ID attribute be present and rendered

        Returns
        -------
        :class:`lxml.etree.Element` or :class:`lxml.etree._FileWriterElement`
            Description

        Raises
        ------
        ValueError
            Description
        """
        with_id = with_id or self._force_id
        attrs = {k: attrencode(v) for k, v in self.attrs.items() if v is not None}
        if with_id:
            if self.id is None:
                raise ValueError("Required id for %r but id was None" % (self,))
            attrs['id'] = self.id
        if xml_file is None:
            elt = etree.Element(self.tag_name, attrs)
            if self.text:
                elt.text = self.text
            return elt
        else:
            return xml_file.element(self.tag_name, **attrs)

    def write(self, xml_file, with_id=False):
        """Write this element to file

        Parameters
        ----------
        xml_file : :class:`XMLWriterMixin`
            The XML writer to build the element for
        with_id : bool, optional
            Whether to require the ID attribute be present and rendered

        See Also
        --------
        :meth:`element`
        """
        el = self.element(with_id=with_id)
        xml_file.write(el)

    def bind(self, xml_file):
        self._xml_file = xml_file

    @contextmanager
    def begin(self, xml_file, with_id=False):
        with self.element(xml_file, with_id):
            self.is_open = True
            yield
        self.is_open = False

    def __call__(self, xml_file=None, with_id=False):
        """Alias of :meth:`element`
        """
        return self.element(xml_file, with_id)

    def __repr__(self):
        return "<%s id=\"%s\" %s>" % (self.tag_name, self.id, " ".join("%s=\"%s\"" % (
            k, attrencode(v)) for k, v in self.attrs.items()))

    def __eq__(self, other):
        try:
            return self.attrs == other.attrs
        except AttributeError:
            return False

    def __ne__(self, other):
        try:
            return self.attrs != other.attrs
        except AttributeError:
            return True

    def __hash__(self):
        return hash((self.tag_name, frozenset(self.attrs.items())))


def identity(x):
    return x


def _make_tag_type(name, **attrs):
    """Creates a new TagBase-derived class dynamically at runtime.
    The new type will be cached.

    Parameters
    ----------
    name : str
        The tag name
    **attrs : dict
        Any class-wide attributes to include

    Returns
    -------
    type
        A TagBase subclass
    """
    return type(name, (TagBase,), {"tag_name": name, "type_attrs": attrs})


def _element(_tag_name, *args, **kwargs):
    """Construct a subclass instance of :class:`TagBase` with the given
    tag name. All other arguments are forwarded to the :class:`TagBase`
    constructor

    Parameters
    ----------
    _tag_name : str
        The name of the tag type to create
    *args
        Arbitrary arguments for the tag
    **kwargs
        Key word arguments for the tag

    Returns
    -------
    :class:`TagBase`
    """

    try:
        eltype = ElementType._cache[_tag_name]
    except KeyError:
        eltype = _make_tag_type(_tag_name)
    return eltype(*args, **kwargs)


def element(xml_file, _tag_name, *args, **kwargs):
    """Construct and immediately write a subclass instance of
    :class:`TagBase` with the given tag name. All other arguments
    are forwarded to the :class:`TagBase` constructor

    Parameters
    ----------
    xml_file : :class:`XMLWriterMixin`
        The XML writer to write to
    _tag_name : str
        The name of the tag type to create
    *args
        Arbitrary arguments for the tag
    **kwargs
        Key word arguments for the tag
    """
    with_id = kwargs.pop("with_id", False)
    if isinstance(_tag_name, basestring):
        el = _element(_tag_name, *args, **kwargs)
    else:
        el = _tag_name
    return el.element(xml_file=xml_file, with_id=with_id)


class AttrProperty(object):
    def __init__(self, name, transform=None):
        if transform is None:
            transform = self._default_transform
        self.name = name
        self.transform = transform

    def _default_transform(self, value):
        return value

    def __get__(self, inst, cls=None):
        return inst.attrs.get(self.name)

    def __set__(self, inst, value):
        inst.attrs[self.name] = self.transform(value)

    def __delete__(self, inst):
        try:
            inst.attrs.pop(self.name)
        except KeyError:
            pass


class XSDTypingProperty(AttrProperty):

    def __get__(self, inst, cls=None):
        value = inst.attrs.get(self.name)
        xsdtype = obj_to_xsdtype(value)
        if xsdtype:
            inst.attrs['type'] = xsdtype
        return value

    def __set__(self, inst, value):
        inst.attrs[self.name] = self.transform(value)
        value = inst.attrs[self.name]
        xsdtype = obj_to_xsdtype(value)
        if xsdtype:
            inst.attrs['type'] = xsdtype



class CVParam(TagBase):
    """Represents a ``<cvParam />``

    .. note::
        This element holds additional data or annotation. Only controlled values
        are allowed here

    Attributes
    ----------
    name: str
        The human-readable name of the parameter
    accession: str
        The within-vocabulary unique identifier of the parameter
    value: object
        The value of the parameter, to be converted to text

    """

    tag_name = "cvParam"
    _track = NO_TRACK

    @classmethod
    def param(cls, name, value=None, **attrs):
        if isinstance(name, cls):
            return name
        elif isinstance(name, (tuple, list)):
            name, value = name
        else:
            if value is None:
                return cls(name=name, **attrs)
            else:
                return cls(name=name, value=value, **attrs)

    @staticmethod
    def _normalize_units(attrs):
        if 'unit_cv_ref' in attrs:
            attrs["unitCvRef"] = attrs.pop("unit_cv_ref")
        if 'unit_accession' in attrs:
            attrs['unitAccession'] = attrs.pop("unit_accession")
        if 'unit_name' in attrs:
            attrs['unitName'] = attrs.pop("unit_name")

        return attrs

    def __init__(self, accession=None, name=None, ref=None, value=None, **attrs):
        if ref is not None:
            attrs["cvRef"] = ref
        if accession is not None:
            attrs["accession"] = accession
        if name is not None:
            attrs["name"] = name
        if value is not None:
            attrs['value'] = value
        else:
            attrs['value'] = ''

        attrs = self._normalize_units(attrs)

        super(CVParam, self).__init__(self.tag_name, **attrs)
        self.patch_accession(accession, ref)

    value = AttrProperty("value")
    ref = AttrProperty("cvRef")
    name = AttrProperty("name")
    accession = AttrProperty("accession")

    unit_name = AttrProperty("unitName")
    unit_accession = AttrProperty("unitAccession")
    unit_cv_ref = AttrProperty("unitCvRef")


    def __call__(self, *args, **kwargs):
        self.write(*args, **kwargs)

    def __repr__(self):
        return "<%s %s>" % (self.tag_name, " ".join("%s=\"%s\"" % (
            k, str(v)) for k, v in self.attrs.items()))

    def patch_accession(self, accession, ref):
        if accession is not None:
            if isinstance(accession, int):
                accession = "%s:%d" % (ref, accession)
                self.attrs['accession'] = accession
            else:
                self.attrs['accession'] = accession


class UserParam(CVParam):
    """Represents a ``<userParam />`` element

    .. note::
        Uncontrolled user parameters (essentially allowing free text). Before
        using these, one should verify whether there is an appropriate CV term
        available, and if so, use the CV term instead
    """

    tag_name = "userParam"
    accession = None

    value = XSDTypingProperty('value')
    type = AttrProperty('type')

    def __init__(self, accession=None, name=None, ref=None, value=None, **attrs):
        super(UserParam, self).__init__(
            accession=accession, name=name, ref=ref, value=value, **attrs)
        # get XSDTypingProperty to force property __get__
        self.value


class ParamGroupReference(TagBase):
    tag_name = "referenceableParamGroupRef"

    def __init__(self, ref):
        self.ref = ref
        super(ParamGroupReference, self).__init__(self.tag_name, ref=ref)

    def __call__(self, *args, **kwargs):
        self.write(*args, **kwargs)


class CVCollection(object):
    """A partially unique collection of :class:`CV` objects.
    """
    def __init__(self, cvs=None):
        self.storage = OrderedDict()
        if cvs:
            self.update(cvs)

    def add(self, cv):
        """Add `cv` to the collection.

        If the :attr:`CV.id` is aleady present in the collection, a warning
        will be issued.

        Parameters
        ----------
        cv : :class:`CV`
            The controlled vocabulary reference
        """
        if cv.id in self.storage:
            old = self.storage[cv.id]
            warnings.warn(
                "Replacing {cv.id} {old.version}@{old.uri} with {cv.version}@{cv.uri}".format(
                    cv=cv, old=old))
        self.storage[cv.id] = cv
        return self

    def update(self, collection):
        """Add each element of `collection` to `self`, calling :meth:`add` on each
        element.

        Parameters
        ----------
        collection : :class:`~.Iterable`
            Any iterable collection of :class:`CV`

        See Also
        --------
        :meth:`add`
        """
        for cv in collection:
            self.add(cv)

    append = add
    extend = update

    def copy(self):
        """Create a copy of `self`

        Returns
        -------
        :class:`CVCollection`
        """
        return self.__class__(self)

    def __add__(self, other):
        copy = self.copy()
        copy.update(other)
        return copy

    def __iadd__(self, other):
        self.update(other)
        return self

    def __getitem__(self, key):
        return self.storage[key]

    def __iter__(self):
        return iter(self.storage.values())

    def __len__(self):
        return len(self.storage)

    def __repr__(self):
        template = "{self.__class__.__name__}({members})"
        members = list(self)
        return template.format(self=self, members=members)


class CV(object):
    """Represent a Controlled Vocabulary associated with the current document.

    The controlled vocabulary referenced must specify a URI that will be used
    to either download the definitions from, to be matched to a cache of pre-built
    vocabularies, or to be matched with a set of special resolution rules for
    handled by the :attr:`resolver`.

    This object acts as a lazy-loading proxy for
    :class:`~.controlled_vocabulary.ControlledVocabulary`.

    Attributes
    ----------
    full_name : str
        The full name of the controlled vocabulary, which may or may not
        be identical to the :attr:`id`
    id : str
        A short unique identifier for the controlled vocabulary
    options : :class:`dict`
        Additional information that may be used during resolution
    resolver : :class:`~.VocabularyResolver`
        The resolver which will handle all requests for this controlled vocabulary
    uri : str
        The location where the definition can be found
    version : str
        The version of the vocabulary resolved
    vocabulary : :class:`~.ControlledVocabulary`
        The parsed term graph defining this vocabulary
    """

    def __init__(self, full_name, id, uri, version=None, resolver=None, **kwargs):
        self.full_name = full_name
        self.id = id
        self.uri = uri
        self._version = version
        self.options = kwargs
        self._vocabulary = None
        self.resolver = None

    def __hash__(self):
        return hash(self.uri)

    def match(self, other):
        return self.uri == other.uri and self.id == other.id and self.full_name == other.full_name

    def __eq__(self, other):
        return self.match(other) and self.version == other.version

    def __ne__(self, other):
        return not self == other

    @property
    def version(self):
        if self._version is None:
            try:
                self._version = self.vocabulary.version
            except AttributeError:
                pass
        return self._version

    @property
    def vocabulary(self):
        if self._vocabulary is None:
            self._vocabulary = self.load()
        return self._vocabulary

    def load(self, handle=None):
        """Load the vocabulary definition from source

        Assumes that the definition is in OBO format

        Parameters
        ----------
        handle : file-like, optional
            An optional file handle which can be read from directly.

        Returns
        -------
        :class:`~.ControlledVocabulary`
            The parsed vocabulary

        Raises
        ------
        KeyError
            When all fallback mechanisms fail, a KeyError is raised
        """
        resolver = self.resolver or controlled_vocabulary.obo_cache
        if handle is None:
            try:
                fp = resolver.resolve(self.uri)
                cv = controlled_vocabulary.ControlledVocabulary.from_obo(fp)
            except ValueError:
                fp = resolver.fallback(self.uri)
                if fp is not None:
                    cv = controlled_vocabulary.ControlledVocabulary.from_obo(fp)
                else:
                    raise KeyError(self.uri)
        else:
            cv = controlled_vocabulary.ControlledVocabulary.from_obo(handle)
        try:
            cv.id = self.id
        except Exception:
            import traceback
            traceback.print_exc()
        return cv

    def __getitem__(self, key):
        return self.vocabulary[key]

    def query(self, *args, **kwargs):
        return self.vocabulary.query(*args, **kwargs)

    def __repr__(self):
        template = "{self.__class__.__name__}({self.full_name!r}, {self.id!r}, {self.uri!r}, {version!r})"
        version = self._version
        if version is None:
            version = "?"
        return template.format(self=self, version=version)


class ProvidedCV(CV):
    """A wrapper around another object that provides the same basic interface
    as :class:`CV` from that object, provided through the :attr:`converter`
    function

    Attributes
    ----------
    converter : Callable
        A function that converts elements of the provided vocabulary into
        something matching the :class:`~.controlled_vocabulary.Entity` interface.
    """

    def __init__(self, id, uri, converter=identity, **kwargs):
        self.converter = converter
        super(ProvidedCV, self).__init__(id=id, uri=uri, **kwargs)

    def load(self, handle=None):
        resolver = self.resolver or controlled_vocabulary.obo_cache
        try:
            cv = resolver.resolve(self.uri)
        except ValueError:
            cv = resolver.fallback(self.uri)
            if cv is None:
                raise LookupError(self.uri)
        try:
            cv.id = self.id
        except Exception:
            pass
        return cv

    def __getitem__(self, key):
        return self.converter(super(ProvidedCV, self).__getitem__(key), self)


class XMLWriterMixin(object):
    """A mixin class to provide methods for writing
    XML elements and aggregate Components.

    Attributes
    ----------
    verbose : bool
        Controls debug printing
    writer: lxml.etree._IncrementalFileWriter
        The low-level XML writer used by :attr:`xmlfile`
    """
    verbose = False

    @contextmanager
    def element(self, element_name, **kwargs):
        """Construct and immediately open a subclass instance of
        :class:`TagBase` with the given tag name. All other arguments
        are forwarded to the :class:`TagBase` constructor.

        Parameters
        ----------
        element_name: str
            The name of the tag type to create
        *args
            Arbitrary arguments for the tag
        **kwargs
            Key word arguments for the tag

        See Also
        --------
        :func:`element`
        """
        if self.verbose:
            print("In XMLWriterMixin.element", element_name, kwargs)
        try:
            if isinstance(element_name, basestring):
                with element(self.writer, element_name, **kwargs):
                    yield
            else:
                with element_name.element(self.writer, **kwargs):
                    yield
        except AttributeError:
            if self.writer is None:
                raise ValueError(
                    "This writer has not yet been created."
                    " Make sure to use this object as a context manager using the "
                    "`with` notation or by explicitly calling its __enter__ and "
                    "__exit__ methods.")
            else:
                raise

    def write(self, *args, **kwargs):
        """Either write a complete XML sub-tree or add free text to the file stream

        Parameters
        ----------
        arg: str or :class:`lxml.etree.Element`
            The entity to be written out.
        """
        if self.verbose:
            print(args[0])
        try:
            self.writer.write(*args, **kwargs)
        except AttributeError:
            if self.writer is None:
                raise ValueError(
                    "This writer has not yet been created."
                    " Make sure to use this object as a context manager using the "
                    "`with` notation or by explicitly calling its __enter__ and "
                    "__exit__ methods.")
            else:
                raise

    def flush(self):
        self.writer.flush()


class XMLFormattingStreamWriter(object):
    """Wraps a writable stream with a layer emulating the
     class:`lxml.etree.xmlfile` interface, save that it automatically
     formats and indents the XML generated without requiring a separate
     pass through the XML pretty printing processing

    Attributes
    ----------
    indent_chars : str
        The characters to indent with
    indent_level : int
        The current indentation level
    stream : :class:`io.IOBase`
        The stream to wrap
    writer : :class:`lxml.etree._IncrementalFileWriter`
        The actual XML writer
    wrote_text_stack : :class:`collections.deque`
        A stack to track if a layer wrote text in one of its children and should not
        have its end tag written on a new line
    xmlfile : :class:`lxml.etree.xmlfile`
        The actual XML writer's controller
    """

    def __init__(self, stream, encoding=None, indent='  ', **kwargs):
        self.stream = stream
        self.xmlfile = etree.xmlfile(self.stream, encoding=encoding, buffered=False, **kwargs)
        self.writer = None
        self.indent_level = 0
        self.indent_chars = indent
        self.wrote_text_stack = deque()

    def __enter__(self):
        self.writer = self.xmlfile.__enter__()
        return self

    def __exit__(self, *args):
        self.xmlfile.__exit__(*args)

    def _indent_tag(self):
        self.writer.write('\n' + (self.indent_chars * self.indent_level))

    @contextmanager
    def element(self, *args, **kwargs):
        if self.indent_level > 0:
            self._indent_tag()
        elt = self.writer.element(*args, **kwargs)
        elt.__enter__()
        self.wrote_text_stack.append(False)
        self.indent_level += 1
        yield
        self.indent_level -= 1
        if not self.wrote_text_stack[-1]:
            self._indent_tag()
        elt.__exit__(None, None, None)
        self.wrote_text_stack.pop()

    def write(self, *args, **kwargs):
        if isinstance(args[0], basestring if not PY3 else (str, bytes)):
            self.wrote_text_stack[-1] = True
        if not self.wrote_text_stack[-1]:
            if self.indent_level > 0:
                self._indent_tag()
        self.writer.write(*args, **kwargs)

    def flush(self):
        self.writer.flush()

    def write_doctype(self):
        self.writer.write_doctype()

    def write_declaration(self):
        self.writer.write_declaration()


class XMLDocumentWriter(XMLWriterMixin):
    """A base class for types which are used to
    write complete XML documents.

    Attributes
    ----------
    outfile : file
        A writable file object
    toplevel : TagBase
        The top-level XML tag
    xmlfile : lxml.etree.xmlfile
        The XML formatter
    writer : lxml.etree._IncrementalFileWriter
        The low-level XML writer used by :attr:`xmlfile`
    """
    @staticmethod
    def toplevel_tag():
        """Overridable method to construct the appropriate
        tag for :attr:`toplevel`

        Returns
        -------
        TagBase
        """
        return _element("xmldocument")

    def __init__(self, outfile, close=False, encoding=None, **kwargs):
        if encoding is None:
            encoding = 'utf-8'
        self.outfile = outfile
        self.encoding = encoding
        self.xmlfile = XMLFormattingStreamWriter(outfile, encoding=encoding, **kwargs)
        self._writer = None
        self.toplevel = None
        self._close = close

    def _should_close(self):
        if self._close is None:
            return hasattr(self.outfile, 'close')
        return bool(self._close)

    @property
    def writer(self):
        if self._writer is None:
            raise ValueError(
                "The writer hasn't been started yet. Either use the object as a context manager"
                " or call the begin() method")
        return self._writer

    @writer.setter
    def writer(self, value):
        self._writer = value

    def begin(self):
        """Writes the doctype and starts the low-level writing machinery
        """
        if self._has_begun():
            return
        self.writer = self.xmlfile.__enter__()
        self.writer.write_declaration()
        toplevel = self.toplevel_tag()
        if isinstance(toplevel, TagBase):
            toplevel_element = element(self.writer, toplevel)
        else:
            toplevel_element = toplevel
        self.toplevel = toplevel_element
        self.toplevel.__enter__()

    def _has_begun(self):
        return self.toplevel is not None

    def __enter__(self):
        """Begins writing, opening the top-level tag
        """
        self.begin()
        return self

    def __exit__(self, exc_type, exc_value, traceback):
        """Closes the top-level tag, the XML formatter,
        and the file itself.
        """
        self.end(exc_type, exc_value, traceback)

    def end(self, exc_type=None, exc_value=None, traceback=None):
        """Ends the XML document, and flushes and closes the file
        """
        self.toplevel.__exit__(exc_type, exc_value, traceback)
        self.writer.flush()
        try:
            self.xmlfile.__exit__(exc_type, exc_value, traceback)
        except etree.SerialisationError as err:
            # There seems to be a bug when `__exit__`ing xmlfile objects, usually
            # when they get large see here: https://bugs.launchpad.net/lxml/+bug/1570388
            # https://github.com/mobiusklein/psims/issues/7
            if str(err).startswith('unknown error'):
                warnings.warn("Error closing file: {}".format(err))
            else:
                raise
        try:
            self.flush()
        except Exception:
            pass
        if self._should_close():
            self.close()

    def controlled_vocabularies(self):
        """Write out the `<cvList>` element and all its children,
        including both this format's default controlled vocabularies
        and those passed as arguments to this method.this

        This method requires writing to have begun.
        """
        cvlist = self.CVList(self.vocabularies)
        cvlist.write(self.writer)

    def close(self):
        try:
            self.outfile.close()
        except AttributeError:
            pass

    def flush(self):
        try:
            self.outfile.flush()
        except AttributeError:
            self.writer.flush()

    def format(self, outfile=None):
        """This method is deprecated. Previously, the serialization
        process did not indent the XML in-place and the lxml pretty printer
        had to be invoked separately. With the addition of :class:`XMLFormattingStreamWriter`,
        the XML stream is formatted in-place as it is being streamed to file.
        """
        warnings.warn(
            "This method is no longer necessary, XML is formatted automatically",
            DeprecationWarning, 2)

    def validate(self):
        """Attempt to perform XSD validation on the XML document
        this writer wrote

        Returns
        -------
        bool:
            Whether or not the document was valid

        lxml.etree.XMLSchema:
            The schema object where errors are logged

        Raises
        ------
        TypeError
            When the file cannot be recovered from the writer object,
            a :class:`TypeError` is thrown
        """
        prev = None
        try:
            if isinstance(self.outfile, basestring):
                fname = self.outfile
            else:
                fname = self.outfile.name
        except AttributeError:
            if hasattr(self.outfile, 'seek'):
                prev = self.outfile.tell()
                self.outfile.seek(0)
                fname = self.outfile
            else:
                raise TypeError("Can't get file from %r" % (self.outfile,))
        result, schema = validate(fname)
        if prev is not None:
            self.outfile.seek(prev)
        return result, schema
