[console_scripts]
psamm-generate-model = psamm.generate_model:main
psamm-import = psamm.importer:main
psamm-import-bigg = psamm.importer:main_bigg
psamm-list-lpsolvers = psamm.lpsolver.generic:list_solvers
psamm-model = psamm.command:main
psamm-sbml-model = psamm.command:main_sbml

[psamm.commands]
chargecheck = psamm.commands.chargecheck:ChargeBalanceCommand
console = psamm.commands.console:ConsoleCommand
dupcheck = psamm.commands.duplicatescheck:DuplicatesCheck
excelexport = psamm.commands.excelexport:ExcelExportCommand
fastgapfill = psamm.commands.fastgapfill:FastGapFillCommand
fba = psamm.commands.fba:FluxBalanceCommand
fluxcheck = psamm.commands.fluxcheck:FluxConsistencyCommand
fluxcoupling = psamm.commands.fluxcoupling:FluxCouplingCommand
formulacheck = psamm.commands.formulacheck:FormulaBalanceCommand
fva = psamm.commands.fva:FluxVariabilityCommand
gapcheck = psamm.commands.gapcheck:GapCheckCommand
gapfill = psamm.commands.gapfill:GapFillCommand
genedelete = psamm.commands.genedelete:GeneDeletionCommand
gimme = psamm.commands.gimme:GimmeCommand
masscheck = psamm.commands.masscheck:MassConsistencyCommand
modelmapping = psamm.commands.model_mapping:ModelMappingCommand
primarypairs = psamm.commands.primarypairs:PrimaryPairsCommand
psammotate = psamm.commands.psammotate:PsammotateCommand
randomsparse = psamm.commands.randomsparse:RandomSparseNetworkCommand
robustness = psamm.commands.robustness:RobustnessCommand
sbmlexport = psamm.commands.sbmlexport:SBMLExport
search = psamm.commands.search:SearchCommand
tableexport = psamm.commands.tableexport:ExportTableCommand
tmfa = psamm.commands.tmfa:TMFACommand
vis = psamm.commands.vis:VisualizationCommand

[psamm.generate_model]
generate-biomass = psamm.generate_biomass:main
generate-database = psamm.generate_model:main_databaseCommand
generate-transporters = psamm.generate_model:main_transporterCommand

[psamm.importer]
JSON = psamm.importers.cobrajson:Importer
MATLAB = psamm.importers.matlab:Importer
SBML = psamm.importers.sbml:NonstrictImporter
SBML-strict = psamm.importers.sbml:StrictImporter
