LICENSE
README.rst
setup.cfg
setup.py
psamm/__init__.py
psamm/balancecheck.py
psamm/bayesian.py
psamm/bayesian_util.py
psamm/command.py
psamm/database.py
psamm/fastcore.py
psamm/fastgapfill.py
psamm/findprimarypairs.py
psamm/fluxanalysis.py
psamm/fluxcoupling.py
psamm/formula.py
psamm/gapfill.py
psamm/gapfilling.py
psamm/generate_biomass.py
psamm/generate_model.py
psamm/graph.py
psamm/importer.py
psamm/manual_curation.py
psamm/mapmaker.py
psamm/massconsistency.py
psamm/metabolicmodel.py
psamm/moma.py
psamm/randomsparse.py
psamm/reaction.py
psamm/translate_id.py
psamm/util.py
psamm.egg-info/PKG-INFO
psamm.egg-info/SOURCES.txt
psamm.egg-info/dependency_links.txt
psamm.egg-info/entry_points.txt
psamm.egg-info/requires.txt
psamm.egg-info/top_level.txt
psamm/commands/__init__.py
psamm/commands/chargecheck.py
psamm/commands/console.py
psamm/commands/duplicatescheck.py
psamm/commands/excelexport.py
psamm/commands/fastgapfill.py
psamm/commands/fba.py
psamm/commands/fluxcheck.py
psamm/commands/fluxcoupling.py
psamm/commands/formulacheck.py
psamm/commands/fva.py
psamm/commands/gapcheck.py
psamm/commands/gapfill.py
psamm/commands/genedelete.py
psamm/commands/gimme.py
psamm/commands/masscheck.py
psamm/commands/model_mapping.py
psamm/commands/primarypairs.py
psamm/commands/psammotate.py
psamm/commands/randomsparse.py
psamm/commands/robustness.py
psamm/commands/sbmlexport.py
psamm/commands/search.py
psamm/commands/tableexport.py
psamm/commands/tmfa.py
psamm/commands/vis.py
psamm/datasource/__init__.py
psamm/datasource/context.py
psamm/datasource/entry.py
psamm/datasource/kegg.py
psamm/datasource/modelseed.py
psamm/datasource/native.py
psamm/datasource/reaction.py
psamm/datasource/sbml.py
psamm/expression/__init__.py
psamm/expression/affine.py
psamm/expression/boolean.py
psamm/external-data/biomass_compound_descriptions.tsv
psamm/external-data/biomass_reaction_descriptions.tsv
psamm/external-data/chebi_pH7_3_mapping.tsv
psamm/external-data/tcdb_families.tsv
psamm/external-data/tcdb_substrates.tsv
psamm/importers/__init__.py
psamm/importers/cobrajson.py
psamm/importers/matlab.py
psamm/importers/sbml.py
psamm/lpsolver/__init__.py
psamm/lpsolver/cplex.py
psamm/lpsolver/generic.py
psamm/lpsolver/glpk.py
psamm/lpsolver/gurobi.py
psamm/lpsolver/lp.py
psamm/lpsolver/qsoptex.py
psamm/tests/__init__.py
psamm/tests/test_balancecheck.py
psamm/tests/test_bayesian.py
psamm/tests/test_command.py
psamm/tests/test_database.py
psamm/tests/test_datasource_entry.py
psamm/tests/test_datasource_kegg.py
psamm/tests/test_datasource_native.py
psamm/tests/test_datasource_reaction.py
psamm/tests/test_datasource_sbml.py
psamm/tests/test_expression_affine.py
psamm/tests/test_expression_boolean.py
psamm/tests/test_fastcore.py
psamm/tests/test_fastgapfill.py
psamm/tests/test_findprimarypairs.py
psamm/tests/test_fluxanalysis.py
psamm/tests/test_fluxcoupling.py
psamm/tests/test_formula.py
psamm/tests/test_gapfill.py
psamm/tests/test_gapfilling.py
psamm/tests/test_gimme.py
psamm/tests/test_graph.py
psamm/tests/test_importer.py
psamm/tests/test_lpsolver_cplex.py
psamm/tests/test_lpsolver_generic.py
psamm/tests/test_lpsolver_lp.py
psamm/tests/test_manual_curation.py
psamm/tests/test_mapmaker.py
psamm/tests/test_massconsistency.py
psamm/tests/test_metabolicmodel.py
psamm/tests/test_model-generation.py
psamm/tests/test_moma.py
psamm/tests/test_psammotate.py
psamm/tests/test_randomsparse.py
psamm/tests/test_reaction.py
psamm/tests/test_robustness.py
psamm/tests/test_tmfa.py
psamm/tests/test_translate_id.py
psamm/tests/test_util.py
psamm/tests/test_vis.py