LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
src/proteusAI/__init__.py
src/proteusAI.egg-info/PKG-INFO
src/proteusAI.egg-info/SOURCES.txt
src/proteusAI.egg-info/dependency_links.txt
src/proteusAI.egg-info/requires.txt
src/proteusAI.egg-info/top_level.txt
src/proteusAI/Library/__init__.py
src/proteusAI/Library/library.py
src/proteusAI/Model/__init__.py
src/proteusAI/Model/model.py
src/proteusAI/Protein/__init__.py
src/proteusAI/Protein/protein.py
src/proteusAI/data_tools/MSA.py
src/proteusAI/data_tools/__init__.py
src/proteusAI/data_tools/pdb.py
src/proteusAI/design_tools/Constraints.py
src/proteusAI/design_tools/MCMC.py
src/proteusAI/design_tools/ZeroShot.py
src/proteusAI/design_tools/__init__.py
src/proteusAI/io_tools/__init__.py
src/proteusAI/io_tools/embeddings.py
src/proteusAI/io_tools/fasta.py
src/proteusAI/io_tools/matrices/BLOSUM50
src/proteusAI/io_tools/matrices/BLOSUM62
src/proteusAI/io_tools/matrices/alphabet
src/proteusAI/mining_tools/__init__.py
src/proteusAI/mining_tools/alphafoldDB.py
src/proteusAI/mining_tools/blast.py
src/proteusAI/mining_tools/uniprot.py
src/proteusAI/ml_tools/__init__.py
src/proteusAI/ml_tools/bo_tools/__init__.py
src/proteusAI/ml_tools/bo_tools/acq_fn.py
src/proteusAI/ml_tools/bo_tools/genetic_algorithm.py
src/proteusAI/ml_tools/esm_tools/__init__.py
src/proteusAI/ml_tools/esm_tools/alphabet.pt
src/proteusAI/ml_tools/esm_tools/esm_tools.py
src/proteusAI/ml_tools/sklearn_tools/__init__.py
src/proteusAI/ml_tools/sklearn_tools/grid_search.py
src/proteusAI/ml_tools/torch_tools/__init__.py
src/proteusAI/ml_tools/torch_tools/torch_tools.py
src/proteusAI/ml_tools/torch_tools/matrices/BLOSUM50
src/proteusAI/ml_tools/torch_tools/matrices/BLOSUM62
src/proteusAI/ml_tools/torch_tools/matrices/alphabet
src/proteusAI/struc/__init__.py
src/proteusAI/struc/struc.py
src/proteusAI/visual_tools/__init__.py
src/proteusAI/visual_tools/plots.py
tests/test_module.py