configs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
configs/configs_base.py,sha256=svswonps-_NvMY6bBuhbbvHx7a_WKaG0wme1q4Fe82g,12755
configs/configs_data.py,sha256=CDQVfOc7gaZks-agPtCUvOU00PE1bF1idEkJRqg4Zng,9834
configs/configs_inference.py,sha256=yb4hHqAUZkMZRR2sFslvZyMnYvPmBI1D8mvpNXBjbro,1372
configs/configs_model_type.py,sha256=sob0rLF9LBaF2kXfIp98r0C3wh3eeNUXqm_FgN-8-No,7976
protenix/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/config/__init__.py,sha256=UND8XLuAoO9MaCJ7mlI7AELOEB8ZVBJtm03MD_tfhKU,673
protenix/config/config.py,sha256=v-9VZpOmPjmH9oTJ23KQDMdYM5aZVccbmVMeF4rDm2s,10731
protenix/config/extend_types.py,sha256=J5xu_4bpDKIrvZHpBKHHSHc6dFuSqwc10OxzJfG666Q,1598
protenix/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/data/ccd.py,sha256=gOu50r8SwXcVko8hxp2rcuA9BhlFBHp4II7mQ1gNkC8,15911
protenix/data/compute_esm.py,sha256=zj_EVwnQiOy6RftJyNr9SIKnRAGiT335qR-BFQkak2M,7605
protenix/data/constants.py,sha256=3yhO9ekf9N4c5wAGlA4lnmT_HTkETWf6jZQ5_T216f8,30889
protenix/data/constraint_featurizer.py,sha256=BnKQ1t8U6I0Gnzg05Pv7gp4u7RvIXX0tnRG_29qjbfY,95475
protenix/data/data_pipeline.py,sha256=EF5fc7pA7bwwaXWzLk417lNCEyhsCxB0Mi0Mzg16PEE,14724
protenix/data/dataloader.py,sha256=SO1jcGHRojUiyN9akDPCANyQOk4PN1a3yvF2uYqL2Ss,13331
protenix/data/dataset.py,sha256=PJd50blTcaHkERPj-gE4FOl-NWu6_ylb9E2QrZ6gGhI,46455
protenix/data/esm_featurizer.py,sha256=WP-okWtAT1mknBmzJIMSbA04loHN7F2bgsUAKL9ATt0,7272
protenix/data/featurizer.py,sha256=o1QThpeO8u3FIOHKlvVQSVwNOw-XvpE62nowDuq-84Y,33704
protenix/data/filter.py,sha256=b7JiM9GzVzS7ORGaiv6KBbL1WXPwIowU8W-NvBjYFsA,27555
protenix/data/infer_data_pipeline.py,sha256=KwE4gtsdwFi43AWi2_oLWUcMeiz1_F7GrWqTNjfpLAM,8741
protenix/data/json_maker.py,sha256=vSUovHRC6F_D3ru5GpjGwQZgN_-km9jefCX6qtzDW2s,12181
protenix/data/json_parser.py,sha256=WFi6GLuw_sjmzAsdo-iuGHHSJeDHxlT5OKM6bPCSj9M,20643
protenix/data/json_to_feature.py,sha256=0xlolmk2ta8QlaabBkCnfwuxVQM3TLc_zSYv5OxHThU,13358
protenix/data/msa_featurizer.py,sha256=Jm6NcZtyUesgOjraaXtxQmPq-HWXMkHl0s-BoyHx360,44764
protenix/data/msa_utils.py,sha256=G_p5dFb_Gv1NH7EbkX5y68dRZrfVoUNGJzsEeEQfeJA,46584
protenix/data/parser.py,sha256=kt88JaiBB-fNsoYgzSHwvZbtcDzb46yoKFFSTPrzofM,104000
protenix/data/substructure_perms.py,sha256=WJHPWldvHlacEBacBEINsgXVoklcT4b5K_ZD5ePVdy0,9826
protenix/data/tokenizer.py,sha256=rXDvbloMl2Ey7h6Wr3G4ug0nuSq52ShKHGgybKjRomU,6807
protenix/data/utils.py,sha256=QJSOy9MtcQ8z3J7OgQyXNvQxFw7cH3ePl6aR6S6z09c,30469
protenix/metrics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/metrics/clash.py,sha256=R92aEaVMd0lvL04HziSfDxX83JTuGRA-lgaW6U82YBI,11116
protenix/metrics/lddt_metrics.py,sha256=0vnaboW6FHU13DjQWai1tPOmDm7Czi2NS-HxuLW-aus,9895
protenix/metrics/rmsd.py,sha256=atfaGlSwxVVFAJViyfi_YMx6XIMs42bNdEJOVI58cKM,9169
protenix/model/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/model/generator.py,sha256=79CH5N6kRLSEQhtio5MwqOPbOrQd8EbeZbKnHhfB9t4,12464
protenix/model/loss.py,sha256=PsIhTEqFqyCF1lc-XyNzdvlTKlb6GyPrSX-rbJ_sEKA,72614
protenix/model/protenix.py,sha256=ivzyPu38NHP350un9rZvbFuM2Orbu3jyp-Jp4KcHGBM,30623
protenix/model/sample_confidence.py,sha256=4nWdbtAvyZ3-Bwe3wiqWKJkpqJnew0PEAmYfeWUqC1c,30114
protenix/model/utils.py,sha256=3w8Fttqd5k_w_Zac74bI_RHPlPsWa-bwEhHzxPHPQy8,14820
protenix/model/layer_norm/__init__.py,sha256=HCGnoL-Xh_B8aMrxbf6Ax0Ubwo_xOLyFEMueBxKkMz0,678
protenix/model/layer_norm/layer_norm.py,sha256=N3Fo-zQK7u1pLZRm4ib163gpjNiPGPJq71fS3MTtFA8,7754
protenix/model/layer_norm/torch_ext_compile.py,sha256=4VeNQSGn-T_Xv0GE7su2og9wwrB6YKpbwDFFT7tpCl0,1775
protenix/model/layer_norm/kernel/compat.h,sha256=v4zWjsdQ71vIInuXGovEStGeJHznkGUsIRWkmlO2kOk,815
protenix/model/layer_norm/kernel/layer_norm_cuda.cpp,sha256=TUbSrD3lmwH22KwhlKdEPpSKFzMQKq4mAJbNhTlhGjc,8117
protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu,sha256=Qf_aTWpyl3MxGU9rVl7xlsJpO2YJocMxCB5s4H4vPmA,27075
protenix/model/layer_norm/kernel/type_shim.h,sha256=CPHE4i9ph4zqhfQQLNED47cP7Av07GdCawHrFX_cLKg,13236
protenix/model/modules/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/model/modules/confidence.py,sha256=XCPwk3gX_l8n2c2TCCvBgfFUb4WHVUEhsBX-IM5N8v0,14544
protenix/model/modules/diffusion.py,sha256=5raV_xd1YXEPwwowcwb-MvqtAcHnN0CcYkeTZKI66dM,21336
protenix/model/modules/embedders.py,sha256=oIz7PrpSDm_3Y4yH6HHHwdvXZf5NbDX5qwVurN26QBc,17429
protenix/model/modules/frames.py,sha256=lmX1jFbLdD9f85p_h9Kz-Ijyu6isrEILHwyg74yyWLk,3863
protenix/model/modules/head.py,sha256=fe4GkhvlOklXSExfLosD45_PrOso1xF6G52H8Aii3Xo,1883
protenix/model/modules/pairformer.py,sha256=DbITGl0slxTi4htW-2bmhwNWqaitu_2VoT8xs5t8BLE,38958
protenix/model/modules/primitives.py,sha256=HdrKL4TBPSQLHBIlM7uB7k69st6E8-YjolLCx3ISEyg,35006
protenix/model/modules/transformer.py,sha256=a81ej0z7MHwAe67UDFPKKwfhie2BmQcRk9zBgFoG1Ig,37049
protenix/openfold_local/__init__.py,sha256=nOd5ihS-U0p_jMy3DHckPqQeiesBIRcT7kO_LTQknC0,81
protenix/openfold_local/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/data/data_transforms.py,sha256=SBTncA1HBKpvkfEVgOI3VvtTBtbgEQikvXt-LfRtnME,8495
protenix/openfold_local/data/errors.py,sha256=EcIylvAhIlsxc7EvBzJnmV4By9fOxz8lcIQp_nWZP9U,874
protenix/openfold_local/data/mmcif_parsing.py,sha256=I4Grh8OW_eqyrkPatEQMT96sqlcmdZ5h8lXGVoH6f1k,18353
protenix/openfold_local/data/msa_identifiers.py,sha256=y3qJw2rJmCKKUQteMb-XpEaAwKYd_z-LpYWxJ1eqM6k,2745
protenix/openfold_local/data/msa_pairing.py,sha256=_Kh9UpgoZs1qQLB8Rvsv_eVnTpX3a_l42KOq5Wumzc8,17949
protenix/openfold_local/data/parsers.py,sha256=NCvzjMP6bRxMW_QC7-dvSDEB9vNKrwbfWKWgnfXoXEE,23461
protenix/openfold_local/data/templates.py,sha256=BsMHUjTMkivfP0Rps4T0yMRtF65c9tvmz5tYNkhWY3c,22158
protenix/openfold_local/data/tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/data/tools/jackhmmer.py,sha256=ROmjntUgExVwWyjbRdutRQRSEtJ2UeAo8axf-g9gguY,9496
protenix/openfold_local/data/tools/utils.py,sha256=wF2Cj8-ukkUHclD0eJQmrOcclEloU-QZD5JsTawe8LQ,1416
protenix/openfold_local/model/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/model/dropout.py,sha256=GzapU35LSC8Ag-XU7U5J6ThhaNEz13Gq88WtsLOlqow,2222
protenix/openfold_local/model/outer_product_mean.py,sha256=Sh0u4CBKP38NYONjXkEbB0UwOy1Y0zXAN4NDjp3oL1U,4854
protenix/openfold_local/model/primitives.py,sha256=wehIdnuTsApz23g4q_ng8ZcYsdSyM54uHP4L6vJsBqw,23722
protenix/openfold_local/model/triangular_attention.py,sha256=-Jc9TEC17u3aEJ2WO-bi_Il1Kkr7TkPvBbVYGW4CkrA,4801
protenix/openfold_local/model/triangular_multiplicative_update.py,sha256=HZqVWb-KdmQhkuU-Vu4-43iOFChwHfeesA57PzEOKEM,22588
protenix/openfold_local/np/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/np/residue_constants.py,sha256=fKP7bSb5fynEmpX50gU3hjHu7WcuTLVk19V7nnW6m_0,46145
protenix/openfold_local/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/utils/all_atom_multimer.py,sha256=SAs4vETEq2UbHTl4GQuIOE2ZGvMjXawtOgarnKAMJkY,18005
protenix/openfold_local/utils/checkpointing.py,sha256=w9x_B4WoA05tsiCcPZOezDrFIIMnvRv5qamy7eO1vok,2806
protenix/openfold_local/utils/chunk_utils.py,sha256=MbhKQ9JKOBX8gZYdWbPRYSgtBMOh9Kvy4SNl3PNK6sY,13642
protenix/openfold_local/utils/feats.py,sha256=vTfJWRVazGPZZkMWIU5-s46ROiDctKgNX87BhUZfyEw,8320
protenix/openfold_local/utils/precision_utils.py,sha256=hyekc8TnNPIgftMR1_cR03RKAfjC_P0yteVpU62fTsQ,802
protenix/openfold_local/utils/rigid_utils.py,sha256=0PRXwH8jLzFkkNvXBYCFkOEoc3TueQAy3A4oEzK9LKI,42036
protenix/openfold_local/utils/tensor_utils.py,sha256=yIO9PwZeY8ZU7XjHt8ZX1kZrB6nsHTa-vq27JYCqyDw,3634
protenix/openfold_local/utils/geometry/__init__.py,sha256=83idmV3hiasE7TXXYJYqumZ58mrMh-EnEkBNBlLrk1c,1114
protenix/openfold_local/utils/geometry/quat_rigid.py,sha256=ZUMte3Q6lVCIPKaxiIry9BLcfkj_wkGQVLYXwHbiq30,1374
protenix/openfold_local/utils/geometry/rigid_matrix_vector.py,sha256=QRguK6eQGQkbDn6BBX4u_qdNkNbKZqWRgzvs8gADLHs,6257
protenix/openfold_local/utils/geometry/rotation_matrix.py,sha256=JWmM0wtnGPCyJai-cykiSi0jv82uVWrfADnOC6m0f8c,6804
protenix/openfold_local/utils/geometry/test_utils.py,sha256=ute3AhSBknm6odylL_-5iKyOVlTW7MhrH8gzJBNJ-Cc,3764
protenix/openfold_local/utils/geometry/utils.py,sha256=WFqPlANufJ9PQ7yQJpl6LX6N2mef6xrm-_2bTQhGVgA,779
protenix/openfold_local/utils/geometry/vector.py,sha256=InWZapYajHDPQvUjc7SLDt4Lzr6UJeOwc-jsWj-Tow4,7731
protenix/openfold_local/utils/kernel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/openfold_local/utils/kernel/attention_core.py,sha256=jGaOzyy7Cry-FpTSqINwBonCbDoq1XyeX9UmEpjyz48,3250
protenix/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/utils/cropping.py,sha256=cfdDApe5SgeXO9lPLTLJjHbKGFngzMFyQ8zntTJo0kw,29081
protenix/utils/distributed.py,sha256=EOikf-Z5z8iERTTkXwMtmQi7FvuKtxTpDXTr_EOfu7I,2714
protenix/utils/file_io.py,sha256=EkAR-rcSNBn9ups18OClKG60Z3kr1f8oFiPD07c2JSM,2526
protenix/utils/geometry.py,sha256=KC6IdSU1zZ3J5NsSoQTMFonjUrFqsjQ6Qzq2KNKmQXI,2316
protenix/utils/logger.py,sha256=1Fl8kvBE6lo8mVTkSCSSiut_byIuAFB1TrSVAlKAmVo,2930
protenix/utils/lr_scheduler.py,sha256=72djLyKIHi1aqCmyKhIobUczTFi7brCaYSLl5DlPbYU,6296
protenix/utils/metrics.py,sha256=5p29cXh1-HarIeM8F_p-qmp9EaRUPdbVTBzmOxiNrHE,2938
protenix/utils/scatter_utils.py,sha256=Dj76CofaghCgkTsIleHGFO8-WoscXDJx03uWdwemVuM,6369
protenix/utils/seed.py,sha256=37VhH9Qh0TFur95ezIKHmnNmgrRhOtlGWjmCBZFI50Q,1496
protenix/utils/torch_utils.py,sha256=v46axIinVtqWVk9E2c1wcIU30jSlQ-UaHVkn5Oa3ThY,7740
protenix/utils/training.py,sha256=FqFDmXGimWaUdhtmqJoL0FV0zTFA9nN6wpg10-2v8KU,5619
protenix/utils/permutation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/utils/permutation/atom_permutation.py,sha256=-qF2AMLR8N2BhBeWo9OFwuBcsJoq3_-54SzuogFzOC0,33316
protenix/utils/permutation/permutation.py,sha256=ZGDDw3yz-cVnJOaYkmjvfWmoLCXvOpfHRnI0ipcHaDA,20060
protenix/utils/permutation/utils.py,sha256=JZu7Bdhh4TJrYVIqUE82yBKn62Q1s5GqrT-DPPHW5Sc,4931
protenix/utils/permutation/chain_permutation/__init__.py,sha256=6blBG7tVrNf1nbfnZyaNeyTV0s5GVS_HtEc2asixwYI,5177
protenix/utils/permutation/chain_permutation/heuristic.py,sha256=YKcPB3uVcpGZS6_-xy-jDHrczmpZ9uug3b0ehwoaqkY,36744
protenix/utils/permutation/chain_permutation/pocket_based_permutation.py,sha256=NjYSer5SlHpHJLNA0VFQ2Bh14Wf5XBv23HgwLd4Erio,10773
protenix/utils/permutation/chain_permutation/utils.py,sha256=7ijzt7uP8Yb_-CKjkvVVIjhIPKCAygpYQZkTandcYAk,2306
protenix/web_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
protenix/web_service/colab_request_parser.py,sha256=MAvU2zjLZ3OS6UUJ98GqUseYLiBRctgP5F7v-E9GKZU,16997
protenix/web_service/colab_request_utils.py,sha256=f76P7t1nKQmlhWp1x7QgC0XIvA18NynH0phTv5wMD6A,9181
protenix/web_service/dependency_url.py,sha256=JbhCzcgurcqFZBwJIXTg5dZLfL9FLbgOOG4tZPbOuRg,2224
protenix/web_service/prediction_visualization.py,sha256=VHEuRl5Xdmdzt41p1fF7Ua7gD9FwbY9iJqA9IKgiT5s,13074
protenix/web_service/viewer.py,sha256=1ywRAUFhs05dH9n3fsTnbhkmSFi521ZgBhb2FZGmjsM,21052
runner/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
runner/batch_inference.py,sha256=6hW0i0Z-CjPLpHT4U_zV4N6pBpJCYu3C09kAaqMv1pk,16556
runner/dumper.py,sha256=cZpCNv2G032XI5K4jAtvPIc1Ydxs7UqrTCq3vdMBdqg,7988
runner/ema.py,sha256=9gr5zKpqEKln4JtFtDN2iFT3TyGBwNWATbGkODHd4wo,2277
runner/inference.py,sha256=zK6kJpnLbqm6Setrb-fRp7bufyi-TtUhuEmUtaDfj7U,14820
runner/msa_search.py,sha256=ldA0xyJy8qvS58u0Va0Ugff5dO3K5Gs3K-ewDw4j9mQ,4491
runner/train.py,sha256=0AQg8Fm8-V0H0Jk3NhPDtUhqeOJahURmp4XKhiL1RUc,24235
scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scripts/colabfold_msa.py,sha256=PaQCPoRwWuVVbiP_c1_SX2GsOGwtaRXOR60kIr-CY4U,9862
scripts/gen_ccd_cache.py,sha256=4j01Y4-WSzKspF8N5jK1k1PQ_G18VBG4I2awJ82RpSA,8606
scripts/prepare_training_data.py,sha256=PC-JxK0PHrD6Lx2QIQi36zu_PDfnv9En67nBVxLRkLw,6885
tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
tests/test_attention_pair_bias.py,sha256=szyuGYVNjBPhRr8FwKwpCR6nqqRGDMEQkDMD5zHs8cM,4298
tests/test_condition_transition.py,sha256=ldjEJlOJHbo_p0OkIWbm_p9nyHZEdoFlRjqEBofSPLo,1804
tests/test_diffusion_transformer.py,sha256=lycCvo6jm9_SLFujOim0j8eDJmvh0AKos7SDGQsWpSI,2656
tests/test_frame.py,sha256=8lAicjfV4yLKBiNRUDw-9TAFrYQX72GncIyi7q7-B1s,3036
tests/test_local_rearrange.py,sha256=gwZPIAadtFgjhyEOA2UlBFfVUWtODPYHCRgafqw8hBE,2048
tests/test_lr_schedule.py,sha256=xCV0Y448qdvZY0xLyhkRZAmDszUxht5w2-5L1boykSk,1974
tests/test_utils.py,sha256=FcAU4IzgRm47yR4I95DaOTbyW-Smn3nT-Zet0MNhSY4,5104
tests/test_weighted_rigid_align.py,sha256=NaoCV0UjM7NMbkiFoI4kfiN-l9CPPChVgejDupptUkk,4374
protenix-0.5.3.dist-info/LICENSE,sha256=rdOw1ESbKVWdb0KdhKCamzY9eP1RazMVqO2UbrEq2Os,11788
protenix-0.5.3.dist-info/METADATA,sha256=_ZaBOniPbpmJ_yhJFiFX7dNHsvvYr-DhnTUzypzgZoo,17498
protenix-0.5.3.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
protenix-0.5.3.dist-info/entry_points.txt,sha256=Z8-RPWrxb8NXNDp2njHu9AHtSC1NJ_xe-NADzPrwPFE,65
protenix-0.5.3.dist-info/top_level.txt,sha256=TfOgDMF4F2HKokQuqK0yXrI2PhCG_VC_GplpxqQxsP0,38
protenix-0.5.3.dist-info/RECORD,,
