## all imports that protein_turnover_website uses
from __future__ import annotations

__all__ = [
    "TurnoverJob",
    "plot_all",
    "Column",
    "DTQuery",
    "FormFilter",
    "RowQuery",
    "RowFilter",
    "dict_to_form_filter",
    "count_spectra",
    "scan_pp_probability",
    "scan_proteins",
    "scan_mzml_spectra",
    "get_isotope_numbers",
    "get_element_names",
    "PeptideSettings",
    "SimpleQueueClient",
    "all_plotting_columns",
    "enrichment_plot",
    "nnls_plot",
    "plotLPF",
    "to_image_url",
    "file2engine",
    "Aggregate",
    "PeptideQuery",
    "ProteinQueryResult",
    "ProteinQuery",
    "RatioAggregate",
    "SimplePeptideQuery",
    "RESULT_EXT",
    "slugify",
    "calc_stats",
    "MINRSQ100",
    "sqlite_version",
    "fixsqlite",
    "remap_job",
    "decompressto",
]

from .jobs import TurnoverJob
from .jobs import slugify
from .jobs import remap_job

from .plotting import plot_all
from .plotting import enrichment_plot
from .plotting import nnls_plot
from .plotting import plotLPF
from .plotting import to_image_url

from .pepxml import count_spectra
from .pepxml import scan_pp_probability

from .protxml import scan_proteins

from .pymz import scan_mzml_spectra

from .utils import decompressto
from .utils import get_element_names
from .utils import get_isotope_numbers
from .utils import PeptideSettings

from .background import SimpleQueueClient

from .exts import RESULT_EXT


from .sqla.query import Column
from .sqla.query import DTQuery
from .sqla.query import FormFilter, all_plotting_columns
from .sqla.query import dict_to_form_filter
from .sqla.query import RowFilter
from .sqla.query import RowQuery
from .sqla.query import Aggregate
from .sqla.query import PeptideQuery
from .sqla.query import ProteinQuery
from .sqla.query import ProteinQueryResult
from .sqla.query import RatioAggregate
from .sqla.query import SimplePeptideQuery
from .sqla.query import sqlite_version
from .sqla.query import calc_stats

from .sqla.model import MINRSQ100

from .sqla.utils import file2engine

from .sqla.iso_peaks import fixsqlite
