LICENSE
README.md
pyproject.toml
src/protein_design_mcp/__init__.py
src/protein_design_mcp/exceptions.py
src/protein_design_mcp/modal_proxy.py
src/protein_design_mcp/server.py
src/protein_design_mcp/setup_cli.py
src/protein_design_mcp.egg-info/PKG-INFO
src/protein_design_mcp.egg-info/SOURCES.txt
src/protein_design_mcp.egg-info/dependency_links.txt
src/protein_design_mcp.egg-info/entry_points.txt
src/protein_design_mcp.egg-info/requires.txt
src/protein_design_mcp.egg-info/top_level.txt
src/protein_design_mcp/pipelines/__init__.py
src/protein_design_mcp/pipelines/alphafold2.py
src/protein_design_mcp/pipelines/esm2_scorer.py
src/protein_design_mcp/pipelines/esmfold.py
src/protein_design_mcp/pipelines/openmm_runner.py
src/protein_design_mcp/pipelines/proteinmpnn.py
src/protein_design_mcp/pipelines/rfdiffusion.py
src/protein_design_mcp/resources/__init__.py
src/protein_design_mcp/resources/structures.py
src/protein_design_mcp/tools/__init__.py
src/protein_design_mcp/tools/analyze.py
src/protein_design_mcp/tools/design_binder.py
src/protein_design_mcp/tools/energy_minimize.py
src/protein_design_mcp/tools/hotspots.py
src/protein_design_mcp/tools/optimize.py
src/protein_design_mcp/tools/predict_structure.py
src/protein_design_mcp/tools/score_stability.py
src/protein_design_mcp/tools/status.py
src/protein_design_mcp/tools/validate.py
src/protein_design_mcp/utils/__init__.py
src/protein_design_mcp/utils/cache.py
src/protein_design_mcp/utils/conservation.py
src/protein_design_mcp/utils/fetch_structure.py
src/protein_design_mcp/utils/job_queue.py
src/protein_design_mcp/utils/metrics.py
src/protein_design_mcp/utils/pdb.py
src/protein_design_mcp/utils/pubmed.py
src/protein_design_mcp/utils/sasa.py
src/protein_design_mcp/utils/uniprot.py
tests/test_alphafold2.py
tests/test_analyze.py
tests/test_conservation.py
tests/test_design_binder.py
tests/test_esmfold.py
tests/test_hotspots.py
tests/test_job_queue.py
tests/test_optimize.py
tests/test_pdb_utils.py
tests/test_proteinmpnn.py
tests/test_pubmed.py
tests/test_rfdiffusion.py
tests/test_sasa.py
tests/test_server_handlers.py
tests/test_tools.py
tests/test_uniprot.py
tests/test_validate_design.py