Metadata-Version: 2.1
Name: promoterExtract
Version: 0.9.3
Summary: Extract promoter sequence for biologists
Home-page: https://github.com/SitaoZ/promoterExtract.git
Author: zhusitao
Author-email: zhusitao1990@163.com
License: MIT
Description: # Overview
        
        The promoterExtract is python package for bioinformatics. 
        Argument -l means the length of promoter, int type.
        Argument -u utr5 after TSS, int type.
        Argument -f reference genome fasta of a specific organism.
        Argument -g annotation file including GTF and GFF.
        Argument -o means output file path.
        
        ## Brief introduction of format package
        
        1. **Install** <br>
            ```bash
            pip install promoterExtract
            # other
            git clone https://github.com/SitaoZ/promoterExtract.git
            cd promoterExtract; python setup.py install
            ```
        
        2. **Usage** <br>
            ```bash
            which get_promoter
            get_promoter -h 
            ```
        
            ```bash
            get_promoter -l 200 -u 100 -f ath.fa -g ath.gff3 -o promoter.csv
            ```
            
        
Keywords: promoter
Platform: UNKNOWN
Description-Content-Type: text/markdown
