.git-blame-ignore-revs
.gitignore
.mailmap
.pre-commit-config.yaml
.readthedocs.yaml
.zenodo.json
CONTRIBUTING.md
LICENSE.txt
README.md
logo.png
pyproject.toml
setup.cfg
setup.py
.github/workflows/install-and-test.yml
.github/workflows/publish-to-pypi.yml
doc/CONTRIBUTING.md
doc/Makefile
doc/README.md
doc/active_learning.rst
doc/cluster.rst
doc/code_structure.rst
doc/components.rst
doc/conf.py
doc/config.rst
doc/dev_run_system.rst
doc/example-fit.ipynb
doc/example-run.ipynb
doc/extensions.rst
doc/index.rst
doc/mcmc.rst
doc/run_system.rst
doc/start.rst
doc/surrogates.rst
doc/ui.rst
doc/variables.rst
doc/pics/al_workflow.png
doc/pics/axis_options_color.png
doc/pics/color_dd.png
doc/pics/error_1D.png
doc/pics/ex_1D_fit.png
doc/pics/ex_2D_fit.png
doc/pics/ex_2Dc.png
doc/pics/ex_3D_fit.png
doc/pics/ex_axis_opt_2D.png
doc/pics/example_directory.png
doc/pics/filter_table.png
doc/pics/filter_table_n.png
doc/pics/graphtype1D.png
doc/pics/graphtype2D.png
doc/pics/layout.png
doc/pics/mcmc_results.png
doc/pics/profit_structure.png
doc/pics/profit_workflow.png
doc/pics/rangeslider.png
doc/pics/run_components.png
doc/pics/run_req.png
doc/pics/sur_structure.png
doc/pics/tools.png
draft/Active_BBQ.py
draft/Active_MGP.py
draft/CONCEPT.md
draft/Random_GP.py
draft/ann.ipynb
draft/autoencoder.ipynb
draft/autoencoder.lyx
draft/autoencoder_pytorch.py
draft/benchmark.py
draft/component.ipynb
draft/config.ipynb
draft/derivative_observations_gpy.py
draft/design.rst
draft/distributions.ipynb
draft/draft_embedding.lyx
draft/draft_kernels.py
draft/draft_pca_surrogate.ipynb
draft/embedding.lyx
draft/embedding.py
draft/embeddings.ipynb
draft/gpfast.f90
draft/gpflow_fit.ipynb
draft/gpflow_fit.py
draft/gpytorch.py
draft/highdim_output.py
draft/highdim_output_algae.py
draft/highdim_output_pendulum.py
draft/import.jl
draft/input.csv
draft/kernels.lyx
draft/kernels_pyccel.py
draft/pce.ipynb
draft/profit_int.yaml
draft/quadrature.ipynb
draft/redmod_conf.py
draft/suruq.wl
draft/test2.jl
draft/test_array_temporaries.f90
draft/test_autoencoder.py
draft/test_autoencoder_sklearn.py
draft/test_config.py
draft/test_dash.jl
draft/test_derivatives_gpy.py
draft/test_embedding_gp.py
draft/test_gp.jl
draft/test_gpytorch.py
draft/test_julia.jl
draft/test_kernels.ipynb
draft/test_linalg.py
draft/test_multioutput.ipynb
draft/test_multitask.py
draft/test_pyjulia.py
draft/test_sparsegrid.py
draft/test_sur.py
draft/test_sympy.py
draft/test_uqp.py
draft/test_uqp_api.py
draft/todo_derivatives_gpy.py
draft/unqu.in
draft/variational_autoencoder.py
draft/GP_Regression/GPy/GP_GPy.py
draft/GP_Regression/profit/GP_profit.py
draft/Pendulum/config.yaml
draft/Pendulum/cosine.nb
draft/Pendulum/cosine_gpy.py
draft/Pendulum/func.py
draft/Pendulum/init.py
draft/Pendulum/init_func.py
draft/Pendulum/kernels.py
draft/Pendulum/param.py
draft/Pendulum/run_GP.py
draft/Pendulum/sqexpsin.nb
draft/algae/Parameters and Uncertainties.docx
draft/algae/autoencoder_algae.ipynb
draft/algae/autoencoder_algae_torch.ipynb
draft/algae/params.txt
draft/algae/params_1998.txt
draft/algae/redmod_conf.py
draft/algae/test_algae.py
draft/algae/test_algae_post.py
draft/bench_gpfunc/Makefile
draft/bench_gpfunc/bench_inline.f90
draft/bench_gpfunc/gpfunc_bench.f90
draft/bench_gpfunc/test.f90
draft/fortran_vs_numpy/bench_fortran_numpy.py
draft/fortran_vs_numpy/bench_kernels.jl
draft/generate_kern_vec/Makefile
draft/generate_kern_vec/bench_inline.f90
draft/generate_kern_vec/gpfunc_bench.f90
draft/generate_kern_vec/indexed_sum.py
draft/generate_kern_vec/test_gen_kern.ipynb
draft/generate_kern_vec/test_kern_vec.py
draft/mockup_scripts/mockup_sur.ipynb
draft/mockup_scripts/mockup_sur_gpytorch.ipynb
draft/optim/draft_optim.py
draft/pca_surrogate/parameters.in
draft/pca_surrogate/post.py
draft/pca_surrogate/profit.yaml
draft/pca_surrogate/simulation.py
draft/pca_surrogate/template/parameters.in
draft/pendulum/cosine/cosine_gpy.py
draft/pendulum/cosine/cosine_test.py
draft/pendulum/cosine/func_cosine.py
draft/pendulum/cosine/init_func_cosine.py
draft/pendulum/cosine/kernels.f90
draft/pendulum/cosine/kernels.py
draft/pendulum/cosine_prod/cosine_prod.py
draft/pendulum/cosine_prod/func_cosine_prod.py
draft/pendulum/cosine_prod/init_func_cosine_prod.py
draft/pendulum/cosine_prod/kernels.f90
draft/pendulum/cosine_prod/kernels.py
draft/pendulum/cosine_prod/test_cosine_prod.py
draft/pendulum/expsin/expsin.py
draft/pendulum/expsin/func_expsin.py
draft/pendulum/expsin/init_func_expsin.py
draft/pendulum/expsin/kernels.f90
draft/pendulum/expsin/kernels.py
draft/pendulum/expsin/test_expsin.py
draft/pendulum/pendulum_old/func.py
draft/pendulum/pendulum_old/init.py
draft/pendulum/pendulum_old/init_func.py
draft/pendulum/pendulum_old/kernels.py
draft/pendulum/pendulum_old/param.py
draft/pendulum/pendulum_updated/expsin_gpy.py
draft/pendulum/pendulum_updated/func.py
draft/pendulum/pendulum_updated/init.py
draft/pendulum/pendulum_updated/init_func.py
draft/pendulum/pendulum_updated/kernels.f90
draft/pendulum/pendulum_updated/kernels.py
draft/pendulum/pendulum_updated/param.py
draft/pendulum/pendulum_updated/prod_extended.py
draft/pendulum/pendulum_updated/run_GP.py
draft/pendulum/prod_extended/cosine_prod.py
draft/pendulum/prod_extended/expsin_gpy.py
draft/pendulum/prod_extended/func.py
draft/pendulum/prod_extended/prod_extended.py
draft/pendulum/prod_extended/test_ProdExtended.py
draft/pendulum/sinus/func_sinus.py
draft/pendulum/sinus/init_func_sinus.py
draft/pendulum/sinus/kernels.f90
draft/pendulum/sinus/kernels.py
draft/pendulum/sinus/sinus_gpy.py
draft/pendulum/sinus/sinus_test.py
draft/pendulum/sinus_prod/func_sinus_prod.py
draft/pendulum/sinus_prod/init_func_sinus_prod.py
draft/pendulum/sinus_prod/kernels.f90
draft/pendulum/sinus_prod/kernels.py
draft/pendulum/sinus_prod/sinus_prod.py
draft/pendulum/sinus_prod/test_sinus_prod.py
examples/api/example_fit.py
examples/api/run.ipynb
examples/api/surrogate.ipynb
examples/mockup/README.md
examples/mockup/mockup.in
examples/mockup/mockup.py
examples/mockup/study/profit.yaml
examples/mockup/study/slurm.yaml
examples/mockup/study/template/mockup.in
examples/mockup/study/template/mockup.py
profit/__init__.py
profit/config.py
profit/defaults.py
profit/main.py
profit.egg-info/PKG-INFO
profit.egg-info/SOURCES.txt
profit.egg-info/dependency_links.txt
profit.egg-info/entry_points.txt
profit.egg-info/requires.txt
profit.egg-info/top_level.txt
profit/al/__init__.py
profit/al/active_learning.py
profit/al/aquisition_functions.py
profit/al/mcmc_al.py
profit/al/simple_al.py
profit/run/__init__.py
profit/run/command.py
profit/run/interface.py
profit/run/local.py
profit/run/runner.py
profit/run/slurm.py
profit/run/worker.py
profit/run/zeromq.py
profit/sur/__init__.py
profit/sur/encoders.py
profit/sur/sur.py
profit/sur/ann/__init__.py
profit/sur/ann/artificial_neural_network.py
profit/sur/gp/__init__.py
profit/sur/gp/custom_surrogate.py
profit/sur/gp/gaussian_process.py
profit/sur/gp/gpy_surrogate.py
profit/sur/gp/sklearn_surrogate.py
profit/sur/gp/backend/Makefile
profit/sur/gp/backend/__init__.py
profit/sur/gp/backend/gp_functions.py
profit/sur/gp/backend/gpfunc.f90
profit/sur/gp/backend/init_kernels.py
profit/sur/gp/backend/kernels.f90
profit/sur/gp/backend/kernels_base.f90
profit/sur/gp/backend/python_kernels.py
profit/sur/linreg/__init__.py
profit/sur/linreg/chaospy_linreg.py
profit/sur/linreg/linear_regression.py
profit/ui/__init__.py
profit/ui/app.py
profit/ui/condhist.py
profit/ui/hist_utils.py
profit/ui/assets/tabs.css
profit/util/__init__.py
profit/util/base_class.py
profit/util/component.py
profit/util/file_handler.py
profit/util/halton.py
profit/util/util.py
profit/util/variable.py
tests/conftest.py
tests/integration_tests/active_learning/test_active_learning.py
tests/integration_tests/active_learning/study_1D/profit_1D.yaml
tests/integration_tests/active_learning/study_2D/profit_2D.yaml
tests/integration_tests/active_learning/study_log/profit_log.yaml
tests/integration_tests/active_learning/study_mcmc/profit_mcmc.yaml
tests/integration_tests/active_learning/study_mcmc/y_experimental.txt
tests/integration_tests/active_learning/template/mockup_1D.in
tests/integration_tests/active_learning/template/mockup_1D.py
tests/integration_tests/active_learning/template/mockup_2D.in
tests/integration_tests/active_learning/template/mockup_2D.py
tests/integration_tests/active_learning/template/mockup_log.py
tests/integration_tests/active_learning/template/mockup_mcmc.in
tests/integration_tests/active_learning/template/mockup_mcmc.py
tests/integration_tests/mockup/test_mockup.py
tests/integration_tests/mockup/simulation_files/custom_components.py
tests/integration_tests/mockup/simulation_files/mockup_1D.py
tests/integration_tests/mockup/simulation_files/mockup_2D.py
tests/integration_tests/mockup/simulation_files/mockup_custom_worker1.py
tests/integration_tests/mockup/simulation_files/mockup_independent.py
tests/integration_tests/mockup/simulation_files/mockup_multi_output.py
tests/integration_tests/mockup/simulation_files/mockup_worker.py
tests/integration_tests/mockup/study_1D/profit_1D.yaml
tests/integration_tests/mockup/study_2D/profit_2D.yaml
tests/integration_tests/mockup/study_custom_post1/profit_custom_post1.yaml
tests/integration_tests/mockup/study_custom_post2/profit_custom_post2.yaml
tests/integration_tests/mockup/study_custom_worker1/profit_custom_worker1.yaml
tests/integration_tests/mockup/study_custom_worker2/profit_custom_worker2.yaml
tests/integration_tests/mockup/study_custom_worker4/profit_custom_worker4.yaml
tests/integration_tests/mockup/study_gpy/profit_gpy.yaml
tests/integration_tests/mockup/study_independent/profit_independent.yaml
tests/integration_tests/mockup/study_karhunenloeve/profit_karhunenloeve.yaml
tests/integration_tests/mockup/study_linreg/profit_linreg.yaml
tests/integration_tests/mockup/study_multi_output/profit_multi_output.yaml
tests/integration_tests/mockup/template_1D/mockup_1D.in
tests/integration_tests/mockup/template_1D/mockup_1D.py
tests/integration_tests/mockup/template_2D/mockup_2D.in
tests/integration_tests/mockup/template_2D/mockup_2D.py
tests/integration_tests/mockup/template_independent/mockup_independent.json
tests/integration_tests/mockup/template_independent/mockup_independent.py
tests/integration_tests/mockup/template_multi_output/mockup_multi_output.in
tests/integration_tests/mockup/template_multi_output/mockup_multi_output.py
tests/unit_tests/config/mockup.py
tests/unit_tests/config/test_config.py
tests/unit_tests/config/study/profit.yaml
tests/unit_tests/config/study/profit_config.py
tests/unit_tests/config/study/profit_default.yaml
tests/unit_tests/config/study/profit_default_2.yaml
tests/unit_tests/config/study/profit_hdf5.yaml
tests/unit_tests/config/study/profit_json.yaml
tests/unit_tests/config/study/profit_symlink.yaml
tests/unit_tests/config/study/template/mockup.in
tests/unit_tests/config/study/template/mockup.py
tests/unit_tests/config/study/template/mockup_json.in
tests/unit_tests/config/study/template/symlink_base.txt
tests/unit_tests/config/study/template/some_subdir/symlink_link.txt
tests/unit_tests/run/hdf5.post
tests/unit_tests/run/json.post
tests/unit_tests/run/mock_worker.py
tests/unit_tests/run/numpytxt.post
tests/unit_tests/run/simulation.py
tests/unit_tests/run/test_command.py
tests/unit_tests/run/test_interface.py
tests/unit_tests/run/test_runner.py
tests/unit_tests/run/template/template.csv
tests/unit_tests/run/template/template.json
tests/unit_tests/sur/test_encoder.py
tests/unit_tests/sur/test_gp.py
tests/unit_tests/sur/test_kernels.py
tests/unit_tests/sur/test_linear_reduction.py
tests/unit_tests/sur/test_sur.py
tests/unit_tests/sur/test_units.py
tests/unit_tests/variable/test_variable.py