LICENSE
MANIFEST.in
README.md
setup.py
ProBEX/__init__.py
ProBEX/add_Scripts.py
ProBEX/run_all.py
ProBEX/__pycache__/__init__.cpython-312.pyc
ProBEX/__pycache__/run_all.cpython-312.pyc
ProBEX/scripts/__init__.py
ProBEX/scripts/GATA4_scripts/SNPscore_memePWM_logo_with_bars.py
ProBEX/scripts/GATA4_scripts/__init__.py
ProBEX/scripts/GATA4_scripts/combine_data_lib_unb_bound_v2.py
ProBEX/scripts/GATA4_scripts/combine_data_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/GATA4_scripts/combine_data_with_zeronM_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/GATA4_scripts/corr_plot_btw_rep.py
ProBEX/scripts/GATA4_scripts/corr_plot_btw_rep_with_accepted_rsIDs.py
ProBEX/scripts/GATA4_scripts/corr_scatter_3000nM_R1_R2.py
ProBEX/scripts/GATA4_scripts/create_heatmap_for_controls.py
ProBEX/scripts/GATA4_scripts/extract_columns_withparameters.py
ProBEX/scripts/GATA4_scripts/extract_increased_decreased_rsIDs_from_scatterplot.py
ProBEX/scripts/GATA4_scripts/extract_increased_decreased_rsIDs_from_scatterplot_foreach_conc.py
ProBEX/scripts/GATA4_scripts/extract_tables_foreach_conc_scatter.py
ProBEX/scripts/GATA4_scripts/extract_top_K_values_for_MEME_LSGKM.py
ProBEX/scripts/GATA4_scripts/fitting_poisson_eQ_2_also_withUnb_with_bi.py
ProBEX/scripts/GATA4_scripts/gen_motifs_pdf_from_meme.py
ProBEX/scripts/GATA4_scripts/generate_mean_heatmap_from_scatter.py
ProBEX/scripts/GATA4_scripts/generate_mean_heatmap_from_scatter_for_eachConc.py
ProBEX/scripts/GATA4_scripts/get_AT_GC_percent_withfitted_C_denom.py
ProBEX/scripts/GATA4_scripts/get_enrichment_calc_bound_lib.py
ProBEX/scripts/GATA4_scripts/get_enrichment_calc_bound_unb.py
ProBEX/scripts/GATA4_scripts/get_enrichment_calc_bound_unb_without_pseudocounts.py
ProBEX/scripts/GATA4_scripts/get_fasta_bed_files_v1.py
ProBEX/scripts/GATA4_scripts/get_fasta_bed_files_v2.py
ProBEX/scripts/GATA4_scripts/get_thedenominators_iteratively.py
ProBEX/scripts/GATA4_scripts/getlist_accepted_discarded_rsIDs.py
ProBEX/scripts/GATA4_scripts/heatmap_increased_decreased_with_K_values.py
ProBEX/scripts/GATA4_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_lib.py
ProBEX/scripts/GATA4_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_unb.py
ProBEX/scripts/GATA4_scripts/lineplot_merged_replicates_with_errorBars_ref_alt_alleles_bound_unb.py
ProBEX/scripts/GATA4_scripts/lineplots_obs_pred_obs_shifted_2_point_5_psuedocounts.py
ProBEX/scripts/GATA4_scripts/motif_affected_unaffected_bySNP.py
ProBEX/scripts/GATA4_scripts/plot_ref_alt_allele_v3_withFC.py
ProBEX/scripts/GATA4_scripts/plot_ref_alt_allele_withFC_without_label.py
ProBEX/scripts/GATA4_scripts/preprocess_snp_seq.py
ProBEX/scripts/GATA4_scripts/primary_thresholds.py
ProBEX/scripts/GATA4_scripts/run_MEME_ChIP_v1.py
ProBEX/scripts/GATA4_scripts/run_MEME_ChIP_v2.py
ProBEX/scripts/GATA4_scripts/scatter_plots_with_accepted_rsIDs.py
ProBEX/scripts/GATA4_scripts/scatter_plots_with_accepted_rsIDs_mean.py
ProBEX/scripts/GATA4_scripts/secondary_thresholds.py
ProBEX/scripts/NKX25_scripts/SNPscore_memePWM_logo_with_bars.py
ProBEX/scripts/NKX25_scripts/SNPscore_memePWM_logo_with_bars_v2.py
ProBEX/scripts/NKX25_scripts/__init__.py
ProBEX/scripts/NKX25_scripts/combine_data_lib_unb_bound_v2.py
ProBEX/scripts/NKX25_scripts/combine_data_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/NKX25_scripts/combine_data_with_zeronM_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/NKX25_scripts/corr_plot_btw_rep.py
ProBEX/scripts/NKX25_scripts/corr_plot_btw_rep_with_accepted_rsIDs.py
ProBEX/scripts/NKX25_scripts/corr_scatter_3000nM_R1_R2.py
ProBEX/scripts/NKX25_scripts/create_heatmap_for_controls.py
ProBEX/scripts/NKX25_scripts/extract_columns_withparameters.py
ProBEX/scripts/NKX25_scripts/extract_increased_decreased_rsIDs_from_scatterplot.py
ProBEX/scripts/NKX25_scripts/extract_increased_decreased_rsIDs_from_scatterplot_foreach_conc.py
ProBEX/scripts/NKX25_scripts/extract_tables_foreach_conc_scatter.py
ProBEX/scripts/NKX25_scripts/extract_top_K_values_for_MEME_LSGKM.py
ProBEX/scripts/NKX25_scripts/fitting_poisson_eQ_2_also_withUnb_with_bi.py
ProBEX/scripts/NKX25_scripts/fitting_poisson_eQ_2_also_withUnb_with_bi_with_pseudocounts.py
ProBEX/scripts/NKX25_scripts/fitting_poisson_eQ_2_also_withUnb_without_bi.py
ProBEX/scripts/NKX25_scripts/gen_motifs_pdf_from_meme.py
ProBEX/scripts/NKX25_scripts/generate_mean_heatmap_from_scatter.py
ProBEX/scripts/NKX25_scripts/generate_mean_heatmap_from_scatter_for_eachConc.py
ProBEX/scripts/NKX25_scripts/get_AT_GC_percent_withfitted_C_denom.py
ProBEX/scripts/NKX25_scripts/get_enrichment_calc_bound_lib.py
ProBEX/scripts/NKX25_scripts/get_enrichment_calc_bound_unb.py
ProBEX/scripts/NKX25_scripts/get_enrichment_calc_bound_unb_without_pseudocounts.py
ProBEX/scripts/NKX25_scripts/get_fasta_bed_files_v1.py
ProBEX/scripts/NKX25_scripts/get_fasta_bed_files_v2.py
ProBEX/scripts/NKX25_scripts/get_thedenominators_iteratively.py
ProBEX/scripts/NKX25_scripts/getlist_accepted_discarded_rsIDs.py
ProBEX/scripts/NKX25_scripts/heatmap_increased_decreased_with_K_values.py
ProBEX/scripts/NKX25_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_lib.py
ProBEX/scripts/NKX25_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_unb.py
ProBEX/scripts/NKX25_scripts/lineplot_merged_replicates_with_errorBars_ref.py
ProBEX/scripts/NKX25_scripts/lineplot_merged_replicates_with_errorBars_ref_alt_alleles_bound_unb.py
ProBEX/scripts/NKX25_scripts/lineplots_obs_pred_obs_shifted_2_point_5_psuedocounts.py
ProBEX/scripts/NKX25_scripts/lineplots_obs_pred_obs_shifted_without_psuedocounts.py
ProBEX/scripts/NKX25_scripts/motif_affected_unaffected_bySNP.py
ProBEX/scripts/NKX25_scripts/motif_affected_unaffected_bySNP_v2.py
ProBEX/scripts/NKX25_scripts/plot_ref_alt_allele_v3_withFC.py
ProBEX/scripts/NKX25_scripts/plot_ref_alt_allele_withFC_without_label _copy.py
ProBEX/scripts/NKX25_scripts/plot_ref_alt_allele_withFC_without_label.py
ProBEX/scripts/NKX25_scripts/preprocess_snp_seq.py
ProBEX/scripts/NKX25_scripts/primary_thresholds.py
ProBEX/scripts/NKX25_scripts/run_MEME_ChIP_v1.py
ProBEX/scripts/NKX25_scripts/run_MEME_ChIP_v2.py
ProBEX/scripts/NKX25_scripts/scatter_plots_with_accepted_rsIDs.py
ProBEX/scripts/NKX25_scripts/scatter_plots_with_accepted_rsIDs_mean.py
ProBEX/scripts/NKX25_scripts/secondary_thresholds.py
ProBEX/scripts/TBX5_scripts/SNPscore_memePWM_logo_with_bars.py
ProBEX/scripts/TBX5_scripts/__init__.py
ProBEX/scripts/TBX5_scripts/combine_data_lib_unb_bound_v2.py
ProBEX/scripts/TBX5_scripts/combine_data_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/TBX5_scripts/combine_data_with_zeronM_lib_unb_bound_with_psuedocounts_2point5perM_for_unbound.py
ProBEX/scripts/TBX5_scripts/corr_plot_btw_rep.py
ProBEX/scripts/TBX5_scripts/corr_plot_btw_rep_with_accepted_rsIDs.py
ProBEX/scripts/TBX5_scripts/corr_scatter_3000nM_R1_R2.py
ProBEX/scripts/TBX5_scripts/create_heatmap_for_controls.py
ProBEX/scripts/TBX5_scripts/extract_columns_withparameters.py
ProBEX/scripts/TBX5_scripts/extract_increased_decreased_rsIDs_from_scatterplot.py
ProBEX/scripts/TBX5_scripts/extract_increased_decreased_rsIDs_from_scatterplot_foreach_conc.py
ProBEX/scripts/TBX5_scripts/extract_tables_foreach_conc_scatter.py
ProBEX/scripts/TBX5_scripts/extract_top_K_values_for_MEME_LSGKM.py
ProBEX/scripts/TBX5_scripts/fitting_poisson_eQ_2_also_withUnb_with_bi.py
ProBEX/scripts/TBX5_scripts/gen_motifs_pdf_from_meme.py
ProBEX/scripts/TBX5_scripts/generate_mean_heatmap_from_scatter.py
ProBEX/scripts/TBX5_scripts/generate_mean_heatmap_from_scatter_for_eachConc.py
ProBEX/scripts/TBX5_scripts/get_AT_GC_percent_withfitted_C_denom.py
ProBEX/scripts/TBX5_scripts/get_enrichment_calc_bound_lib.py
ProBEX/scripts/TBX5_scripts/get_enrichment_calc_bound_unb.py
ProBEX/scripts/TBX5_scripts/get_enrichment_calc_bound_unb_without_pseudocounts.py
ProBEX/scripts/TBX5_scripts/get_fasta_bed_files_v1.py
ProBEX/scripts/TBX5_scripts/get_fasta_bed_files_v2.py
ProBEX/scripts/TBX5_scripts/get_thedenominators_iteratively.py
ProBEX/scripts/TBX5_scripts/getlist_accepted_discarded_rsIDs.py
ProBEX/scripts/TBX5_scripts/heatmap_increased_decreased_with_K_values.py
ProBEX/scripts/TBX5_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_lib.py
ProBEX/scripts/TBX5_scripts/lineplot_merged_replicates_with_errorBars_all_alleles_bound_unb.py
ProBEX/scripts/TBX5_scripts/lineplot_merged_replicates_with_errorBars_ref_alt_alleles_bound_unb.py
ProBEX/scripts/TBX5_scripts/lineplots_obs_pred_obs_shifted_2_point_5_psuedocounts.py
ProBEX/scripts/TBX5_scripts/motif_affected_unaffected_bySNP.py
ProBEX/scripts/TBX5_scripts/plot_ref_alt_allele_v3_withFC.py
ProBEX/scripts/TBX5_scripts/plot_ref_alt_allele_withFC_without_label.py
ProBEX/scripts/TBX5_scripts/preprocess_snp_seq.py
ProBEX/scripts/TBX5_scripts/primary_thresholds.py
ProBEX/scripts/TBX5_scripts/run_MEME_ChIP_v1.py
ProBEX/scripts/TBX5_scripts/run_MEME_ChIP_v2.py
ProBEX/scripts/TBX5_scripts/scatter_plots_with_accepted_rsIDs.py
ProBEX/scripts/TBX5_scripts/scatter_plots_with_accepted_rsIDs_mean.py
ProBEX/scripts/TBX5_scripts/secondary_thresholds.py
ProBEX_snp.egg-info/PKG-INFO
ProBEX_snp.egg-info/SOURCES.txt
ProBEX_snp.egg-info/dependency_links.txt
ProBEX_snp.egg-info/entry_points.txt
ProBEX_snp.egg-info/requires.txt
ProBEX_snp.egg-info/top_level.txt