MANIFEST.in
README.rst
setup.py
bin/count_chimeric_reads_per_gene.py
bin/generate_BED_file_of_endpoints.py
bin/generate_genes_gff.py
bin/generate_transcripts_gff.py
bin/get_sequences_for_meme.py
bin/map_chimeric_fragments.py
bin/map_single_fragments.py
bin/plot_circos_plot.py
bin/plot_regions_interactions.py
bin/pro_clash_significant_regions.py
data/E_coli_K12/EcoCyc_genes_190.gff
data/E_coli_K12/EcoCyc_transcripts_190.gff
data/E_coli_K12/REP_elements_table_from_SmartTrables.txt
data/E_coli_K12/curated_list_of_sRNA_mRNA_interactions.txt
data/E_coli_K12/draw_links.conf
data/E_coli_K12/ec_karyotype.conf
data/E_coli_K12/genome.fa
data/E_coli_K12/plot_interactions.sh
data/E_coli_K12/rRNAs_highlight.txt
data/E_coli_K12/sRNAs_highlight_wide.txt
data/E_coli_K12/tRNAs_highlight_wide.txt
pro_clash/RNAup_tar_pred.py
pro_clash/__init__.py
pro_clash/dinuc_shuffle.py
pro_clash/ecocyc_parser.py
pro_clash/parse_ecocyc_TUs.py
pro_clash.egg-info/PKG-INFO
pro_clash.egg-info/SOURCES.txt
pro_clash.egg-info/dependency_links.txt
pro_clash.egg-info/not-zip-safe
pro_clash.egg-info/requires.txt
pro_clash.egg-info/top_level.txt