import os
import numpy as np
from polsartools.utils.proc_utils import process_chunks_parallel
from polsartools.utils.utils import conv2d,time_it
from .dxp_infiles import dxpc2files
[docs]
@time_it
def halphadp(infolder, window_size=1, outType="tif",
cog_flag=False, cog_overviews = [2, 4, 8, 16],
write_flag=True, max_workers=None,block_size=(512, 512),
progress_callback=None, # for QGIS plugin
):
"""
Computes Entropy and alpha parameters from the input dual-polarization (dual-pol) C2 matrix data, and writes
the output in various formats (GeoTIFF or binary). The computation is performed in parallel for efficiency.
Example:
--------
>>> halphadp("path_to_C2_folder", window_size=5, outType="tif", cog_flag=True)
This will compute Entropy and alpha parameters from the C2 matrix in the specified folder,
generating output in Geotiff format with Cloud Optimized GeoTIFF settings enabled.
Parameters:
-----------
infolder : str
Path to the input folder containing C2 matrix data.
window_size : int, optional
Size of the processing window (default is 1).
outType : str, optional
Output format of the files; can be "tif" (GeoTIFF) or "bin" (binary) (default is "tif").
cog_flag : bool, optional
If True, outputs Cloud Optimized GeoTIFF (COG) (default is False).
cog_overviews : list of int, optional
List of overview levels to be used for COGs (default is [2, 4, 8, 16]).
write_flag : bool, optional
Whether to write the computed output files (default is True).
max_workers : int, optional
Number of parallel workers for processing (default is None, which uses one less than the number of available CPU cores).
block_size : tuple of int, optional
Size of each processing block (default is (512, 512)), defining the spatial chunk dimensions used in parallel computation.
Returns:
--------
None
The function writes the computed entropy, alpha parameters to the specified output format.
Output Files:
-------------
- "Hdp.tif" or "Hdp.bin"
- "alphadp.tif" or "alphadp.bin"
"""
input_filepaths = dxpc2files(infolder)
output_filepaths = []
if outType == "bin":
output_filepaths.append(os.path.join(infolder, "Hdp.bin"))
output_filepaths.append(os.path.join(infolder, "alphadp.bin"))
output_filepaths.append(os.path.join(infolder, "e1_norm.bin"))
output_filepaths.append(os.path.join(infolder, "e2_norm.bin"))
else:
output_filepaths.append(os.path.join(infolder, "Hdp.tif"))
output_filepaths.append(os.path.join(infolder, "alphadp.tif"))
output_filepaths.append(os.path.join(infolder, "e1_norm.tif"))
output_filepaths.append(os.path.join(infolder, "e2_norm.tif"))
process_chunks_parallel(input_filepaths, list(output_filepaths), window_size=window_size, write_flag=write_flag,
processing_func=process_chunk_halphadp,block_size=block_size, max_workers=max_workers, num_outputs=len(output_filepaths),
cog_flag=cog_flag,
cog_overviews=cog_overviews,
progress_callback=progress_callback
)
def process_chunk_halphadp(chunks, window_size,*args):
kernel = np.ones((window_size,window_size),np.float32)/(window_size*window_size)
c11_T1 = np.array(chunks[0])
c12_T1 = np.array(chunks[1])+1j*np.array(chunks[2])
c21_T1 = np.conj(c12_T1)
c22_T1 = np.array(chunks[3])
# C2_stack = np.zeros((np.shape(c11_T1)[0],np.shape(c11_T1)[1],4))
C2_stack = np.dstack((c11_T1,c12_T1,np.conj(c12_T1),c22_T1)).astype(np.complex64)
if window_size>1:
C2_stack[:,:,0] = conv2d(np.real(c11_T1),kernel)+1j*conv2d(np.imag(c11_T1),kernel)
C2_stack[:,:,1] = conv2d(np.real(c12_T1),kernel)+1j*conv2d(np.imag(c12_T1),kernel)
C2_stack[:,:,2] = conv2d(np.real(c21_T1),kernel)+1j*conv2d(np.imag(c21_T1),kernel)
C2_stack[:,:,3] = conv2d(np.real(c22_T1),kernel)+1j*conv2d(np.imag(c22_T1),kernel)
data = C2_stack.reshape( C2_stack.shape[0]*C2_stack.shape[1], C2_stack.shape[2] ).reshape((-1,2,2))
# infinity, nan handling
data = np.nan_to_num(data, nan=0.0, posinf=0, neginf=0)
# data = np.nan_to_num(data, nan=np.nan, posinf=np.nan, neginf=np.nan)
evals, evecs = np.linalg.eig(data)
evals[:,0][evals[:,0] <0] = 0
evals[:,1][evals[:,1] >1] = 1
eval_norm1 = (evals[:,1])/(evals[:,0] + evals[:,1])
eval_norm1[eval_norm1<0]=0
eval_norm1[eval_norm1>1]=1
eval_norm2 = (evals[:,0])/(evals[:,0] + evals[:,1])
eval_norm2[eval_norm2<0]=0
eval_norm2[eval_norm2>1]=1
# # %Alpha 1
eig_vec_r1 = np.real(evecs[:,0,1])
eig_vec_c1 = np.imag(evecs[:,0,1])
alpha1 = np.arccos(np.sqrt(eig_vec_r1*eig_vec_r1 + eig_vec_c1*eig_vec_c1))*180/np.pi
# # %Alpha 2
eig_vec_r2 = np.real(evecs[:,0,0])
eig_vec_c2 = np.imag(evecs[:,0,0])
alpha2 = np.arccos(np.sqrt(eig_vec_r2*eig_vec_r2 + eig_vec_c2*eig_vec_c2))*180/np.pi
# # %Cloude Alpha
alpha_ = (eval_norm1*alpha1 + eval_norm2*alpha2)
alpha_ = alpha_.reshape(C2_stack.shape[0],C2_stack.shape[1])
# # %Entropy
H = - eval_norm1*np.log10(eval_norm1)/np.log10(2) - eval_norm2*np.log10(eval_norm2)/np.log10(2)
H = H.reshape(C2_stack.shape[0],C2_stack.shape[1])
# alpha1 = alpha1.reshape(C2_stack.shape[0],C2_stack.shape[1])
# alpha2 = alpha2.reshape(C2_stack.shape[0],C2_stack.shape[1])
# print(np.nanmean(H),np.nanmean(alpha_))
eval_norm1 = np.real(eval_norm1.reshape(C2_stack.shape[0],C2_stack.shape[1]))
eval_norm2 = np.real(eval_norm2.reshape(C2_stack.shape[0],C2_stack.shape[1]))
return np.real(H).astype(np.float32),np.real(alpha_).astype(np.float32),eval_norm1.astype(np.float32),eval_norm2.astype(np.float32)
