LICENSE
README.md
pyproject.toml
setup.cfg
src/poli/__init__.py
src/poli/external_isolated_function_script.py
src/poli/objective_factory.py
src/poli/repository.py
src/poli/benchmarks/__init__.py
src/poli/benchmarks/guacamol.py
src/poli/benchmarks/pmo.py
src/poli/benchmarks/toy_continuous_functions_benchmark.py
src/poli/core/__init__.py
src/poli/core/abstract_benchmark.py
src/poli/core/abstract_black_box.py
src/poli/core/abstract_isolated_function.py
src/poli/core/abstract_problem_factory.py
src/poli/core/benchmark_information.py
src/poli/core/black_box_information.py
src/poli/core/data_package.py
src/poli/core/exceptions.py
src/poli/core/lambda_black_box.py
src/poli/core/multi_objective_black_box.py
src/poli/core/problem.py
src/poli/core/registry.py
src/poli/core/chemistry/__init__.py
src/poli/core/chemistry/environment.yml
src/poli/core/chemistry/tdc_black_box.py
src/poli/core/chemistry/tdc_isolated_function.py
src/poli/core/chemistry/tdc_problem.py
src/poli/core/chemistry/data_packages/__init__.py
src/poli/core/chemistry/data_packages/five_thousand_smiles.npz
src/poli/core/chemistry/data_packages/random_molecules_data_package.py
src/poli/core/proteins/__init__.py
src/poli/core/proteins/foldx_black_box.py
src/poli/core/proteins/foldx_isolated_function.py
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src/poli/core/proteins/data_packages/foldx_supervised_data_packages.py
src/poli/core/proteins/data_packages/rasp_supervised_data_packages.py
src/poli/core/proteins/data_packages/rfp_foldx_scores.txt
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src/poli/core/proteins/data_packages/rfp_sequences.txt
src/poli/core/util/__init__.py
src/poli/core/util/abstract_observer.py
src/poli/core/util/algorithm_observer_wrapper.py
src/poli/core/util/default_observer.py
src/poli/core/util/external_observer.py
src/poli/core/util/observer_wrapper.py
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src/poli/core/util/alignment/is_aligned.py
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src/poli/core/util/batch/batch_input.py
src/poli/core/util/chemistry/__init__.py
src/poli/core/util/chemistry/string_to_molecule.py
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src/poli/core/util/observers/mlflow_observer.py
src/poli/core/util/proteins/__init__.py
src/poli/core/util/proteins/defaults.py
src/poli/core/util/proteins/foldx.py
src/poli/core/util/proteins/mutations.py
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src/poli/core/util/proteins/rasp/rasp_interface.py
src/poli/core/util/proteins/rasp/inner_rasp/LICENSE.txt
src/poli/core/util/proteins/rasp/inner_rasp/PrismData.py
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src/poli/core/util/proteins/rasp/inner_rasp/cavity_model.py
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src/poli/core/util/seeding/__init__.py
src/poli/core/util/seeding/seeding.py
src/poli/objective_repository/__init__.py
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src/poli/objective_repository/albuterol_similarity/register.py
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