LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
pmx/__init__.py
pmx/_version.py
pmx/atom.py
pmx/atomselection.py
pmx/builder.py
pmx/chain.py
pmx/cpp.py
pmx/estimators.py
pmx/ffparser.py
pmx/forcefield.py
pmx/forcefield2.py
pmx/futil.py
pmx/geometry.py
pmx/histogram.py
pmx/library.py
pmx/model.py
pmx/molecule.py
pmx/mutdb.py
pmx/ndx.py
pmx/odict.py
pmx/options.py
pmx/parser.py
pmx/rotamer.py
pmx/tCNC.py
pmx/xdrfile.py
pmx/xtc.py
pmx/data/bbdep.pkl
pmx/data/blosum62_new.mat
pmx/data/bp.pkl
pmx/data/bp_amber.pkl
pmx/data/bp_charmm.pkl
pmx/data/ffamber99sb.rtp
pmx/data/ffamber99sbbon.itp
pmx/data/ffamber99sbnb.itp
pmx/data/rna.pkl
pmx/data/mutff/ffamber99sb-c.tdb
pmx/data/mutff/ffamber99sb-n.tdb
pmx/data/mutff/ffamber99sb.atp
pmx/data/mutff/ffamber99sb.hdb
pmx/data/mutff/ffamber99sb.itp
pmx/data/mutff/ffamber99sb.mtp
pmx/data/mutff/ffamber99sb.rtp
pmx/data/mutff/ffamber99sbbon.itp
pmx/data/mutff/ffamber99sbnb.itp
pmx/data/mutff/ions.itp
pmx/data/mutff/spce.itp
pmx/data/mutff/tip3p.gro
pmx/data/mutff/tip3p.itp
pmx/data/mutff45/atommass.dat
pmx/data/mutff45/elements.dat
pmx/data/mutff45/residuetypes.dat
pmx/data/mutff45/spc216.gro
pmx/data/mutff45/specbond.dat
pmx/data/mutff45/vdwradii.dat
pmx/data/mutff45/xlateat.dat
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp
pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat
pmx/data/mutff45/amber99sbmut.ff/Makefile.am
pmx/data/mutff45/amber99sbmut.ff/Makefile.in
pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn
pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb
pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb
pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb
pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b
pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp
pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd
pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp
pmx/data/mutff45/amber99sbmut.ff/dna.arn
pmx/data/mutff45/amber99sbmut.ff/dna.hdb
pmx/data/mutff45/amber99sbmut.ff/dna.r2b
pmx/data/mutff45/amber99sbmut.ff/dna.rtp
pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save
pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp
pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp
pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp
pmx/data/mutff45/amber99sbmut.ff/forcefield.doc
pmx/data/mutff45/amber99sbmut.ff/forcefield.itp
pmx/data/mutff45/amber99sbmut.ff/gbsa.itp
pmx/data/mutff45/amber99sbmut.ff/ions.itp
pmx/data/mutff45/amber99sbmut.ff/list.dat
pmx/data/mutff45/amber99sbmut.ff/mutres.mtp
pmx/data/mutff45/amber99sbmut.ff/mutres.rtp
pmx/data/mutff45/amber99sbmut.ff/rna.arn
pmx/data/mutff45/amber99sbmut.ff/rna.hdb
pmx/data/mutff45/amber99sbmut.ff/rna.r2b
pmx/data/mutff45/amber99sbmut.ff/rna.rtp
pmx/data/mutff45/amber99sbmut.ff/spc.itp
pmx/data/mutff45/amber99sbmut.ff/spce.itp
pmx/data/mutff45/amber99sbmut.ff/tip3p.itp
pmx/data/mutff45/amber99sbmut.ff/tip4p.itp
pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp
pmx/data/mutff45/amber99sbmut.ff/tip5p.itp
pmx/data/mutff45/amber99sbmut.ff/urea.itp
pmx/data/mutff45/amber99sbmut.ff/watermodels.dat
pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn
pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb
pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb
pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb
pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b
pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp
pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd
pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp
pmx/data/mutff45/charmm22starmut.ff/cmap.itp
pmx/data/mutff45/charmm22starmut.ff/dna.arn
pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb
pmx/data/mutff45/charmm22starmut.ff/dna.hdb
pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb
pmx/data/mutff45/charmm22starmut.ff/dna.rtp
pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp
pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp
pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp
pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp
pmx/data/mutff45/charmm22starmut.ff/forcefield.doc
pmx/data/mutff45/charmm22starmut.ff/forcefield.itp
pmx/data/mutff45/charmm22starmut.ff/gb.itp
pmx/data/mutff45/charmm22starmut.ff/ions.itp
pmx/data/mutff45/charmm22starmut.ff/lipids.hdb
pmx/data/mutff45/charmm22starmut.ff/lipids.rtp
pmx/data/mutff45/charmm22starmut.ff/mutres.arn
pmx/data/mutff45/charmm22starmut.ff/mutres.mtp
pmx/data/mutff45/charmm22starmut.ff/mutres.rtp
pmx/data/mutff45/charmm22starmut.ff/rna.arn
pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb
pmx/data/mutff45/charmm22starmut.ff/rna.hdb
pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb
pmx/data/mutff45/charmm22starmut.ff/rna.r2b
pmx/data/mutff45/charmm22starmut.ff/rna.rtp
pmx/data/mutff45/charmm22starmut.ff/spc.itp
pmx/data/mutff45/charmm22starmut.ff/spce.itp
pmx/data/mutff45/charmm22starmut.ff/tip3p.itp
pmx/data/mutff45/charmm22starmut.ff/tip4p.itp
pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp
pmx/data/mutff45/charmm22starmut.ff/tip5p.itp
pmx/data/mutff45/charmm22starmut.ff/tips3p.itp
pmx/data/mutff45/charmm22starmut.ff/watermodels.dat
pmx/data/mutff45/charmm36mut.ff/aminoacids.arn
pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb
pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb
pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb
pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b
pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp
pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd
pmx/data/mutff45/charmm36mut.ff/atomtypes.atp
pmx/data/mutff45/charmm36mut.ff/cmap.itp
pmx/data/mutff45/charmm36mut.ff/ffbonded.itp
pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp
pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp
pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp
pmx/data/mutff45/charmm36mut.ff/forcefield.doc
pmx/data/mutff45/charmm36mut.ff/forcefield.itp
pmx/data/mutff45/charmm36mut.ff/gb.itp
pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp
pmx/data/mutff45/charmm36mut.ff/ions.itp
pmx/data/mutff45/charmm36mut.ff/mutres.arn
pmx/data/mutff45/charmm36mut.ff/mutres.mtp
pmx/data/mutff45/charmm36mut.ff/mutres.rtp
pmx/data/mutff45/charmm36mut.ff/spc.itp
pmx/data/mutff45/charmm36mut.ff/spce.itp
pmx/data/mutff45/charmm36mut.ff/tip3p.itp
pmx/data/mutff45/charmm36mut.ff/tip4p.itp
pmx/data/mutff45/charmm36mut.ff/tips3p.itp
pmx/data/mutff45/charmm36mut.ff/watermodels.dat
pmx/data/mutff45/charmm36mut.ff/watermodels.itp
pmx/data/mutff45/oplsaamut.ff/1propanol.itp
pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb
pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb
pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb
pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b
pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp
pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd
pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t
pmx/data/mutff45/oplsaamut.ff/atomtypes.atp
pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp
pmx/data/mutff45/oplsaamut.ff/dummies.dat
pmx/data/mutff45/oplsaamut.ff/ethanol.itp
pmx/data/mutff45/oplsaamut.ff/ffbonded.itp
pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp
pmx/data/mutff45/oplsaamut.ff/forcefield.doc
pmx/data/mutff45/oplsaamut.ff/forcefield.itp
pmx/data/mutff45/oplsaamut.ff/gbsa.itp
pmx/data/mutff45/oplsaamut.ff/ions.itp
pmx/data/mutff45/oplsaamut.ff/methanol.itp
pmx/data/mutff45/oplsaamut.ff/mutres.mtp
pmx/data/mutff45/oplsaamut.ff/mutres.rtp
pmx/data/mutff45/oplsaamut.ff/spc.itp
pmx/data/mutff45/oplsaamut.ff/spce.itp
pmx/data/mutff45/oplsaamut.ff/tip3p.itp
pmx/data/mutff45/oplsaamut.ff/tip4p.itp
pmx/data/mutff45/oplsaamut.ff/tip5p.itp
pmx/data/mutff45/oplsaamut.ff/watermodels.dat
pmx/data/mutff45dna/atommass.dat
pmx/data/mutff45dna/elements.dat
pmx/data/mutff45dna/residuetypes.dat
pmx/data/mutff45dna/spc216.gro
pmx/data/mutff45dna/specbond.dat
pmx/data/mutff45dna/vdwradii.dat
pmx/data/mutff45dna/xlateat.dat
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp
pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp
pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat
pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp
pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp
pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup
pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp
pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp
pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc
pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp
pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp
pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp
pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn
pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb
pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb
pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb
pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b
pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp
pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd
pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp
pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp
pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp
pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp
pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp
pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp
pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp
pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat
pmx/extensions/pmx/Energy.c
pmx/extensions/pmx/Geometry.c
pmx/extensions/pmx/Geometry.h
pmx/extensions/pmx/cpp_test.cpp
pmx/extensions/pmx/init.c
pmx/extensions/pmx/pmx.h
pmx/extensions/pmx/wrap_Geometry.c
pmx/extensions/xdr/trr2xtc.c
pmx/extensions/xdr/xdrfile.c
pmx/extensions/xdr/xdrfile.h
pmx/extensions/xdr/xdrfile_c_test.c
pmx/extensions/xdr/xdrfile_trr.c
pmx/extensions/xdr/xdrfile_trr.h
pmx/extensions/xdr/xdrfile_xtc.c
pmx/extensions/xdr/xdrfile_xtc.h
pmx/scripts/__init__.py
pmx/scripts/analyze_dhdl.py
pmx/scripts/cli.py
pmx/scripts/generate_hybrid_residue.py
pmx/scripts/generate_hybrid_topology.py
pmx/scripts/make_amber.py
pmx/scripts/md_setup.py
pmx/scripts/mutate.py
pmx/scripts/prepare_crooks_runs.py
pmx/scripts/set_gmxlib.py
pmx/scripts/ligands/atoms_to_morph.py
pmx/scripts/ligands/atoms_to_morph_rdkit2018.py
pmx/scripts/ligands/build_mst_graph.py
pmx/scripts/ligands/make_hybrid.py
pmx/scripts/ligands/one_ff_file.py
pmx_satumut.egg-info/PKG-INFO
pmx_satumut.egg-info/SOURCES.txt
pmx_satumut.egg-info/dependency_links.txt
pmx_satumut.egg-info/entry_points.txt
pmx_satumut.egg-info/not-zip-safe
pmx_satumut.egg-info/requires.txt
pmx_satumut.egg-info/top_level.txt