README.rst
setup.cfg
setup.py
/home/joshua/projects/plastid/kentUtils/samtabix/bgzf.c
/home/joshua/projects/plastid/kentUtils/samtabix/index.c
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/home/joshua/projects/plastid/kentUtils/src/lib/bbiWrite.c
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/home/joshua/projects/plastid/kentUtils/src/lib/bwgQuery.c
/home/joshua/projects/plastid/kentUtils/src/lib/bwgValsOnChrom.c
/home/joshua/projects/plastid/kentUtils/src/lib/cirTree.c
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/home/joshua/projects/plastid/kentUtils/src/lib/localmem.c
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/home/joshua/projects/plastid/plastid/genomics/roitools.c
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kentUtils/README.md
kentUtils/samtabix/AUTHORS
kentUtils/samtabix/COPYING
kentUtils/samtabix/README.md
kentUtils/samtabix/bam.h
kentUtils/samtabix/bam2bcf.h
kentUtils/samtabix/bam_endian.h
kentUtils/samtabix/bgzf.c
kentUtils/samtabix/bgzf.h
kentUtils/samtabix/errmod.h
kentUtils/samtabix/faidx.h
kentUtils/samtabix/index.c
kentUtils/samtabix/kaln.h
kentUtils/samtabix/khash.h
kentUtils/samtabix/klist.h
kentUtils/samtabix/knetfile.h
kentUtils/samtabix/kprobaln.h
kentUtils/samtabix/kseq.h
kentUtils/samtabix/ksort.h
kentUtils/samtabix/kstring.c
kentUtils/samtabix/kstring.h
kentUtils/samtabix/radix.h
kentUtils/samtabix/razf.h
kentUtils/samtabix/sam.h
kentUtils/samtabix/sam_header.h
kentUtils/samtabix/sample.h
kentUtils/samtabix/tabix.h
kentUtils/samtabix/tabix.py
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kentUtils/src/inc/aliType.h
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kentUtils/src/inc/annoFormatter.h
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kentUtils/src/inc/annoGratorQuery.h
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kentUtils/src/inc/annoRow.h
kentUtils/src/inc/annoStreamBigBed.h
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kentUtils/src/inc/annoStreamVcf.h
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kentUtils/src/inc/apacheLog.h
kentUtils/src/inc/asParse.h
kentUtils/src/inc/axt.h
kentUtils/src/inc/bPlusTree.h
kentUtils/src/inc/bamFile.h
kentUtils/src/inc/bandExt.h
kentUtils/src/inc/base64.h
kentUtils/src/inc/basicBed.h
kentUtils/src/inc/bbiFile.h
kentUtils/src/inc/bigBed.h
kentUtils/src/inc/bigWig.h
kentUtils/src/inc/binRange.h
kentUtils/src/inc/bits.h
kentUtils/src/inc/blastParse.h
kentUtils/src/inc/boxClump.h
kentUtils/src/inc/boxLump.h
kentUtils/src/inc/bwgInternal.h
kentUtils/src/inc/cda.h
kentUtils/src/inc/chain.h
kentUtils/src/inc/chainBlock.h
kentUtils/src/inc/chainConnect.h
kentUtils/src/inc/chainToAxt.h
kentUtils/src/inc/chainToPsl.h
kentUtils/src/inc/cheapcgi.h
kentUtils/src/inc/cirTree.h
kentUtils/src/inc/codebias.h
kentUtils/src/inc/common.h
kentUtils/src/inc/correlate.h
kentUtils/src/inc/crTree.h
kentUtils/src/inc/crudeali.h
kentUtils/src/inc/diGraph.h
kentUtils/src/inc/dlist.h
kentUtils/src/inc/dnaLoad.h
kentUtils/src/inc/dnaMarkov.h
kentUtils/src/inc/dnaMotif.h
kentUtils/src/inc/dnaseq.h
kentUtils/src/inc/dnautil.h
kentUtils/src/inc/dtdParse.h
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kentUtils/src/inc/elmTree.h
kentUtils/src/inc/emblParse.h
kentUtils/src/inc/ens.h
kentUtils/src/inc/errAbort.h
kentUtils/src/inc/errCatch.h
kentUtils/src/inc/fa.h
kentUtils/src/inc/fieldedTable.h
kentUtils/src/inc/filePath.h
kentUtils/src/inc/flydna.h
kentUtils/src/inc/fof.h
kentUtils/src/inc/fq.h
kentUtils/src/inc/fuzzyFind.h
kentUtils/src/inc/gapCalc.h
kentUtils/src/inc/gdf.h
kentUtils/src/inc/genoFind.h
kentUtils/src/inc/genomeRangeTree.h
kentUtils/src/inc/gfClientLib.h
kentUtils/src/inc/gfPcrLib.h
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kentUtils/src/inc/gff3.h
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kentUtils/src/inc/hmac.h
kentUtils/src/inc/hmmPfamParse.h
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kentUtils/src/inc/htmlPage.h
kentUtils/src/inc/htmshell.h
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kentUtils/src/inc/internet.h
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kentUtils/src/inc/jointalign.h
kentUtils/src/inc/jpegSize.h
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kentUtils/src/inc/keys.h
kentUtils/src/inc/knetUdc.h
kentUtils/src/inc/kxTok.h
kentUtils/src/inc/linefile.h
kentUtils/src/inc/localmem.h
kentUtils/src/inc/log.h
kentUtils/src/inc/longToList.h
kentUtils/src/inc/maDbRep.h
kentUtils/src/inc/maToFf.h
kentUtils/src/inc/maf.h
kentUtils/src/inc/mailViaPipe.h
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kentUtils/src/inc/memalloc.h
kentUtils/src/inc/memgfx.h
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kentUtils/src/inc/mime.h
kentUtils/src/inc/net.h
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kentUtils/src/inc/nibTwo.h
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kentUtils/src/inc/obscure.h
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kentUtils/src/inc/pslTbl.h
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kentUtils/src/inc/qa.h
kentUtils/src/inc/quickHeap.h
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kentUtils/src/inc/ra.h
kentUtils/src/inc/raToStruct.h
kentUtils/src/inc/rainbow.h
kentUtils/src/inc/rangeTree.h
kentUtils/src/inc/rbTree.h
kentUtils/src/inc/regexHelper.h
kentUtils/src/inc/repMask.h
kentUtils/src/inc/rle.h
kentUtils/src/inc/rnautil.h
kentUtils/src/inc/rql.h
kentUtils/src/inc/rudp.h
kentUtils/src/inc/scoreWindow.h
kentUtils/src/inc/seg.h
kentUtils/src/inc/seqOut.h
kentUtils/src/inc/seqStats.h
kentUtils/src/inc/shaRes.h
kentUtils/src/inc/sig.h
kentUtils/src/inc/slog.h
kentUtils/src/inc/snof.h
kentUtils/src/inc/snofmake.h
kentUtils/src/inc/spaceSaver.h
kentUtils/src/inc/spacedColumn.h
kentUtils/src/inc/spacedSeed.h
kentUtils/src/inc/splatAli.h
kentUtils/src/inc/splix.h
kentUtils/src/inc/sqlList.h
kentUtils/src/inc/sqlNum.h
kentUtils/src/inc/subText.h
kentUtils/src/inc/sufa.h
kentUtils/src/inc/sufx.h
kentUtils/src/inc/supStitch.h
kentUtils/src/inc/synQueue.h
kentUtils/src/inc/tabRow.h
kentUtils/src/inc/textOut.h
kentUtils/src/inc/tokenizer.h
kentUtils/src/inc/trans3.h
kentUtils/src/inc/trix.h
kentUtils/src/inc/twoBit.h
kentUtils/src/inc/udc.h
kentUtils/src/inc/unfin.h
kentUtils/src/inc/vGfx.h
kentUtils/src/inc/vcf.h
kentUtils/src/inc/vcfBits.h
kentUtils/src/inc/verbose.h
kentUtils/src/inc/wormdna.h
kentUtils/src/inc/xAli.h
kentUtils/src/inc/xa.h
kentUtils/src/inc/xap.h
kentUtils/src/inc/xenalign.h
kentUtils/src/inc/xmlEscape.h
kentUtils/src/inc/xp.h
kentUtils/src/inc/zlibFace.h
kentUtils/src/lib/README
kentUtils/src/lib/aliType.c
kentUtils/src/lib/asParse.c
kentUtils/src/lib/bPlusTree.c
kentUtils/src/lib/base64.c
kentUtils/src/lib/basicBed.c
kentUtils/src/lib/bbiRead.c
kentUtils/src/lib/bbiWrite.c
kentUtils/src/lib/bigBed.c
kentUtils/src/lib/binRange.c
kentUtils/src/lib/bits.c
kentUtils/src/lib/bwgQuery.c
kentUtils/src/lib/bwgValsOnChrom.c
kentUtils/src/lib/cirTree.c
kentUtils/src/lib/common.c
kentUtils/src/lib/dlist.c
kentUtils/src/lib/dnautil.c
kentUtils/src/lib/dystring.c
kentUtils/src/lib/errAbort.c
kentUtils/src/lib/ffAli.c
kentUtils/src/lib/hash.c
kentUtils/src/lib/hmmstats.c
kentUtils/src/lib/https.c
kentUtils/src/lib/intExp.c
kentUtils/src/lib/internet.c
kentUtils/src/lib/kxTok.c
kentUtils/src/lib/linefile.c
kentUtils/src/lib/localmem.c
kentUtils/src/lib/memalloc.c
kentUtils/src/lib/obscure.c
kentUtils/src/lib/osunix.c
kentUtils/src/lib/pipeline.c
kentUtils/src/lib/psl.c
kentUtils/src/lib/rangeTree.c
kentUtils/src/lib/rbTree.c
kentUtils/src/lib/sqlList.c
kentUtils/src/lib/sqlNum.c
kentUtils/src/lib/tokenizer.c
kentUtils/src/lib/udc.c
kentUtils/src/lib/verbose.c
kentUtils/src/lib/wildcmp.c
kentUtils/src/lib/zlibFace.c
plastid/__init__.py
plastid.egg-info/PKG-INFO
plastid.egg-info/SOURCES.txt
plastid.egg-info/dependency_links.txt
plastid.egg-info/entry_points.txt
plastid.egg-info/not-zip-safe
plastid.egg-info/requires.txt
plastid.egg-info/top_level.txt
plastid/bin/__init__.py
plastid/bin/counts_in_region.py
plastid/bin/crossmap.py
plastid/bin/cs.py
plastid/bin/findjuncs.py
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plastid/bin/gff_parent_types.py
plastid/bin/make_wiggle.py
plastid/bin/metagene.py
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plastid/bin/psite.py
plastid/bin/reformat_transcripts.py
plastid/bin/slidejuncs.py
plastid/bin/test_table_equality.py
plastid/genomics/__init__.py
plastid/genomics/c_common.pxd
plastid/genomics/c_common.pyx
plastid/genomics/genome_array.py
plastid/genomics/genome_hash.py
plastid/genomics/map_factories.pxd
plastid/genomics/map_factories.pyx
plastid/genomics/roitools.pxd
plastid/genomics/roitools.pyx
plastid/genomics/seqtools.py
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plastid/plotting/__init__.py
plastid/plotting/colors.py
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plastid/readers/__init__.py
plastid/readers/autosql.py
plastid/readers/bbifile.pxd
plastid/readers/bbifile.pyx
plastid/readers/bed.py
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plastid/readers/bigbed.pyx
plastid/readers/bigwig.pxd
plastid/readers/bigwig.pyx
plastid/readers/bowtie.py
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plastid/test/data/__init__.py
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plastid/test/data/mini/__init__.py
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plastid/util/scriptlib/template.py
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plastid/util/services/exceptions.py
plastid/util/services/lists.py
plastid/util/services/mini2to3.py
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