Metadata-Version: 2.4
Name: plasann
Version: 1.1.3
Summary: PlasAnn - Plasmid sequence annotation tool with enhanced dependency management
Author-email: Habibul Islam <hislam2@ur.rochester.edu>
License: MIT
Project-URL: Homepage, https://github.com/ajlopatkin/PlasAnn
Project-URL: Repository, https://github.com/ajlopatkin/PlasAnn
Project-URL: Bug Tracker, https://github.com/ajlopatkin/PlasAnn/issues
Keywords: plasmid,annotation,bioinformatics,blast,prodigal
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas>=1.3.0
Requires-Dist: biopython>=1.79
Requires-Dist: numpy>=1.21.0
Requires-Dist: pycirclize>=0.3.0
Requires-Dist: matplotlib>=3.5.0
Requires-Dist: gdown>=4.0.0
Requires-Dist: requests>=2.25.0
Dynamic: license-file

# PlasAnn

A comprehensive plasmid annotation tool that enables the identification and visualization of key plasmid features.

## Installation
pip install plasann

## Usage
PlasAnn -i input.fasta -o output_directory -t fasta

or for GenBank files:
PlasAnn -i input.gbk -o output_directory -t genbank

## Features

- Automated identification of coding sequences
- Detection of origins of replication (oriC)
- Detection of origins of transfer (oriT)
- Identification of mobile genetic elements
- Recognition of replicon types
- Generation of annotated GenBank files
- Creation of circular plasmid maps

## Dependencies

- BLAST+ (must be installed separately)
- Prodigal (must be installed separately)

## License

MIT
