Metadata-Version: 2.2
Name: plasann
Version: 1.0.7
Summary: A plasmid annotation tool
Home-page: https://github.com/ajlopatkin/PlasAnn
Author: Habibul Islam
Author-email: hislam2@ur.rochester.edu
Project-URL: Bug Tracker, https://github.com/ajlopatkin/plasann/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython>=1.78
Requires-Dist: pandas>=1.0.0
Requires-Dist: matplotlib>=3.0.0
Requires-Dist: pycirclize>=0.1.0
Requires-Dist: gdown>=4.0.0
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: project-url
Dynamic: requires-dist
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# PlasAnn

A comprehensive plasmid annotation tool that enables the identification and visualization of key plasmid features.

## Installation
pip install plasann

## Usage
PlasAnn -i input.fasta -o output_directory -t fasta

or for GenBank files:
PlasAnn -i input.gbk -o output_directory -t genbank

## Features

- Automated identification of coding sequences
- Detection of origins of replication (oriC)
- Detection of origins of transfer (oriT)
- Identification of mobile genetic elements
- Recognition of replicon types
- Generation of annotated GenBank files
- Creation of circular plasmid maps

## Dependencies

- BLAST+ (must be installed separately)
- Prodigal (must be installed separately)

## License

MIT
