# plantvarfilter/preanalysis/__init__.py
from .reference_manager import ReferenceManager, ReferenceIndexStatus
from .fastq_qc import FastqQCReport, run_fastq_qc
from .aligner import Aligner, AlignmentResult

__all__ = [
    "ReferenceManager", "ReferenceIndexStatus",
    "FastqQCReport", "run_fastq_qc",
    "Aligner", "AlignmentResult",
]
