README.md
pyproject.toml
plantvarfilter/__init__.py
plantvarfilter/annotation_utils.py
plantvarfilter/batch_gwas.py
plantvarfilter/bcftools_utils.py
plantvarfilter/bigfile_handler.py
plantvarfilter/genomic_prediction_pipeline.py
plantvarfilter/gwas_AI_model.py
plantvarfilter/gwas_pipeline.py
plantvarfilter/helpers.py
plantvarfilter/ld_utils.py
plantvarfilter/main_ui.py
plantvarfilter/pipeline_plots.py
plantvarfilter/samtools_utils.py
plantvarfilter/variant_caller_utils.py
plantvarfilter/vcf_quality.py
plantvarfilter.egg-info/PKG-INFO
plantvarfilter.egg-info/SOURCES.txt
plantvarfilter.egg-info/dependency_links.txt
plantvarfilter.egg-info/entry_points.txt
plantvarfilter.egg-info/requires.txt
plantvarfilter.egg-info/top_level.txt
plantvarfilter/assets/gui_overview.png
plantvarfilter/assets/logo.png
plantvarfilter/assets/logo_lab.png
plantvarfilter/assets/fonts/test.ttf
plantvarfilter/linux/__init__.py
plantvarfilter/preanalysis/__init__.py
plantvarfilter/preanalysis/aligner.py
plantvarfilter/preanalysis/fastq_qc.py
plantvarfilter/preanalysis/reference_manager.py
plantvarfilter/ui/__init__.py
plantvarfilter/ui/ui_components.py
plantvarfilter/ui/ui_header.py
plantvarfilter/ui/ui_pages.py
plantvarfilter/ui/ui_theme.py
plantvarfilter/ui/watermark.py