.all-contributorsrc
.coveragerc
.deepsource.toml
.gitattributes
.gitignore
.readthedocs.yaml
Dockerfile
LICENSE
MANIFEST.in
README.md
environment.yml
mkdocs.yml
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
.github/ISSUE_TEMPLATE/discussion.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/something-is-not-working.md
.github/workflows/continuous-integration.yml
.github/workflows/publish-package.yml
plantcv/__init__.py
plantcv.egg-info/PKG-INFO
plantcv.egg-info/SOURCES.txt
plantcv.egg-info/dependency_links.txt
plantcv.egg-info/entry_points.txt
plantcv.egg-info/requires.txt
plantcv.egg-info/top_level.txt
plantcv/learn/__init__.py
plantcv/learn/cli.py
plantcv/learn/naive_bayes.py
plantcv/learn/train_kmeans.py
plantcv/parallel/__init__.py
plantcv/parallel/cli.py
plantcv/parallel/inspect_dataset.py
plantcv/parallel/job_builder.py
plantcv/parallel/multiprocess.py
plantcv/parallel/parsers.py
plantcv/parallel/process_results.py
plantcv/parallel/workflow_inputs.py
plantcv/parallel/workflowconfig.py
plantcv/plantcv/__init__.py
plantcv/plantcv/_debug.py
plantcv/plantcv/_helpers.py
plantcv/plantcv/_show_dataarray.py
plantcv/plantcv/apply_mask.py
plantcv/plantcv/auto_crop.py
plantcv/plantcv/background_subtraction.py
plantcv/plantcv/canny_edge_detect.py
plantcv/plantcv/classes.py
plantcv/plantcv/closing.py
plantcv/plantcv/color_palette.py
plantcv/plantcv/create_labels.py
plantcv/plantcv/crop.py
plantcv/plantcv/crop_position_mask.py
plantcv/plantcv/deprecation_warning.py
plantcv/plantcv/dilate.py
plantcv/plantcv/distance_transform.py
plantcv/plantcv/erode.py
plantcv/plantcv/fatal_error.py
plantcv/plantcv/fill.py
plantcv/plantcv/fill_holes.py
plantcv/plantcv/flip.py
plantcv/plantcv/floodfill.py
plantcv/plantcv/gaussian_blur.py
plantcv/plantcv/get_kernel.py
plantcv/plantcv/hist_equalization.py
plantcv/plantcv/image_add.py
plantcv/plantcv/image_fusion.py
plantcv/plantcv/image_subtract.py
plantcv/plantcv/invert.py
plantcv/plantcv/kmeans_classifier.py
plantcv/plantcv/laplace_filter.py
plantcv/plantcv/logical_and.py
plantcv/plantcv/logical_or.py
plantcv/plantcv/logical_xor.py
plantcv/plantcv/median_blur.py
plantcv/plantcv/naive_bayes_classifier.py
plantcv/plantcv/opening.py
plantcv/plantcv/output_mask_ori_img.py
plantcv/plantcv/plot_image.py
plantcv/plantcv/print_image.py
plantcv/plantcv/readbayer.py
plantcv/plantcv/readimage.py
plantcv/plantcv/report_size_marker_area.py
plantcv/plantcv/rgb2gray.py
plantcv/plantcv/rgb2gray_cmyk.py
plantcv/plantcv/rgb2gray_hsv.py
plantcv/plantcv/rgb2gray_lab.py
plantcv/plantcv/scharr_filter.py
plantcv/plantcv/segment_image_series.py
plantcv/plantcv/shift_img.py
plantcv/plantcv/sobel_filter.py
plantcv/plantcv/spatial_clustering.py
plantcv/plantcv/stdev_filter.py
plantcv/plantcv/warn.py
plantcv/plantcv/watershed.py
plantcv/plantcv/white_balance.py
plantcv/plantcv/within_frame.py
plantcv/plantcv/analyze/__init__.py
plantcv/plantcv/analyze/bound_horizontal.py
plantcv/plantcv/analyze/bound_vertical.py
plantcv/plantcv/analyze/color.py
plantcv/plantcv/analyze/distribution.py
plantcv/plantcv/analyze/grayscale.py
plantcv/plantcv/analyze/npq.py
plantcv/plantcv/analyze/size.py
plantcv/plantcv/analyze/spectral_index.py
plantcv/plantcv/analyze/spectral_reflectance.py
plantcv/plantcv/analyze/thermal.py
plantcv/plantcv/analyze/yii.py
plantcv/plantcv/annotate/__init__.py
plantcv/plantcv/annotate/points.py
plantcv/plantcv/filters/__init__.py
plantcv/plantcv/filters/eccentricity.py
plantcv/plantcv/filters/obj_props.py
plantcv/plantcv/homology/__init__.py
plantcv/plantcv/homology/acute.py
plantcv/plantcv/homology/constella.py
plantcv/plantcv/homology/constellaqc.py
plantcv/plantcv/homology/landmark_reference_pt_dist.py
plantcv/plantcv/homology/scale_features.py
plantcv/plantcv/homology/space.py
plantcv/plantcv/homology/starscape.py
plantcv/plantcv/homology/x_axis_pseudolandmark.py
plantcv/plantcv/homology/y_axis_pseudolandmarks.py
plantcv/plantcv/hyperspectral/__init__.py
plantcv/plantcv/hyperspectral/_avg_reflectance.py
plantcv/plantcv/hyperspectral/_inverse_covariance.py
plantcv/plantcv/hyperspectral/calibrate.py
plantcv/plantcv/hyperspectral/extract_wavelength.py
plantcv/plantcv/hyperspectral/read_data.py
plantcv/plantcv/hyperspectral/rot90.py
plantcv/plantcv/hyperspectral/write_data.py
plantcv/plantcv/io/__init__.py
plantcv/plantcv/io/open_url.py
plantcv/plantcv/io/random_subset.py
plantcv/plantcv/io/read_dataset.py
plantcv/plantcv/morphology/__init__.py
plantcv/plantcv/morphology/analyze_stem.py
plantcv/plantcv/morphology/check_cycles.py
plantcv/plantcv/morphology/fill_segments.py
plantcv/plantcv/morphology/find_branch_pts.py
plantcv/plantcv/morphology/find_tips.py
plantcv/plantcv/morphology/prune.py
plantcv/plantcv/morphology/segment_angle.py
plantcv/plantcv/morphology/segment_combine.py
plantcv/plantcv/morphology/segment_curvature.py
plantcv/plantcv/morphology/segment_ends.py
plantcv/plantcv/morphology/segment_euclidean_length.py
plantcv/plantcv/morphology/segment_id.py
plantcv/plantcv/morphology/segment_insertion_angle.py
plantcv/plantcv/morphology/segment_path_length.py
plantcv/plantcv/morphology/segment_skeleton.py
plantcv/plantcv/morphology/segment_sort.py
plantcv/plantcv/morphology/segment_tangent_angle.py
plantcv/plantcv/morphology/segment_width.py
plantcv/plantcv/morphology/skeletonize.py
plantcv/plantcv/photosynthesis/__init__.py
plantcv/plantcv/photosynthesis/read_cropreporter.py
plantcv/plantcv/photosynthesis/reassign_frame_labels.py
plantcv/plantcv/qc/__init__.py
plantcv/plantcv/qc/exposure.py
plantcv/plantcv/roi/__init__.py
plantcv/plantcv/roi/quick_filter.py
plantcv/plantcv/roi/roi2mask.py
plantcv/plantcv/roi/roi_methods.py
plantcv/plantcv/spectral_index/__init__.py
plantcv/plantcv/spectral_index/spectral_index.py
plantcv/plantcv/threshold/__init__.py
plantcv/plantcv/threshold/threshold_methods.py
plantcv/plantcv/transform/__init__.py
plantcv/plantcv/transform/auto_correct_color.py
plantcv/plantcv/transform/checkerboard_calib.py
plantcv/plantcv/transform/color_correction.py
plantcv/plantcv/transform/detect_color_card.py
plantcv/plantcv/transform/find_color_card.py
plantcv/plantcv/transform/gamma_correct.py
plantcv/plantcv/transform/merge_images.py
plantcv/plantcv/transform/nonuniform_illumination.py
plantcv/plantcv/transform/rescale.py
plantcv/plantcv/transform/resize.py
plantcv/plantcv/transform/rotate.py
plantcv/plantcv/transform/warp.py
plantcv/plantcv/visualize/__init__.py
plantcv/plantcv/visualize/auto_threshold_methods.py
plantcv/plantcv/visualize/chlorophyll_fluorescence.py
plantcv/plantcv/visualize/colorize_label_img.py
plantcv/plantcv/visualize/colorize_masks.py
plantcv/plantcv/visualize/colorspaces.py
plantcv/plantcv/visualize/histogram.py
plantcv/plantcv/visualize/hyper_histogram.py
plantcv/plantcv/visualize/obj_size_ecdf.py
plantcv/plantcv/visualize/obj_sizes.py
plantcv/plantcv/visualize/overlay_two_imgs.py
plantcv/plantcv/visualize/pixel_scatter_vis.py
plantcv/plantcv/visualize/pseudocolor.py
plantcv/plantcv/visualize/tile.py
plantcv/plantcv/visualize/time_lapse_video.py
plantcv/utils/__init__.py
plantcv/utils/cli.py
plantcv/utils/converters.py
plantcv/utils/sample_images.py