MANIFEST.in
README.md
setup.cfg
setup.py
pipasic.egg-info/PKG-INFO
pipasic.egg-info/SOURCES.txt
pipasic.egg-info/dependency_links.txt
pipasic.egg-info/entry_points.txt
pipasic.egg-info/requires.txt
pipasic.egg-info/top_level.txt
pipasic_src/PASiC.py
pipasic_src/TideProcessing.py
pipasic_src/__init__.py
pipasic_src/inspectparser.py
pipasic_src/pipasic.py
pipasic_src/plotting.py
pipasic_src/readMGF.py
pipasic_src/runInspect_user_config.py
pipasic_src/simulation_based_similarity.py
pipasic_src/trypticpeptides.py
pipasic_src/config_files/config_Inspect_MSSim.txt
pipasic_src/config_files/config_Inspect_MSSim_py.txt
pipasic_src/config_files/config_Inspect_py.txt
pipasic_src/config_files/config_MSSim_v1_9_short.ini
pipasic_src/config_files/song.txt
pipasic_src/inspect/.DS_Store
pipasic_src/inspect/AdjustPTM.py
pipasic_src/inspect/AminoAcidMasses.txt
pipasic_src/inspect/BasicStats.py
pipasic_src/inspect/BuildConsensusSpectrum.py
pipasic_src/inspect/BuildInspect.py
pipasic_src/inspect/BuildMGF.py
pipasic_src/inspect/CCSVM1.model
pipasic_src/inspect/CCSVM1.range
pipasic_src/inspect/CCSVM2.model
pipasic_src/inspect/CCSVM2.range
pipasic_src/inspect/CCSVM2Phos.model
pipasic_src/inspect/CCSVM2Phos.range
pipasic_src/inspect/Ch2BNPEP.dat
pipasic_src/inspect/Ch2BNPEPQ.dat
pipasic_src/inspect/Ch3BNPEP.dat
pipasic_src/inspect/Ch3BNPEPQ.dat
pipasic_src/inspect/CombinePTMFeatures.py
pipasic_src/inspect/CompareHEKPTM.py
pipasic_src/inspect/ComputeFScore.py
pipasic_src/inspect/ComputePTMFeatures.py
pipasic_src/inspect/ExplainPTMs.py
pipasic_src/inspect/FDRUtils.py
pipasic_src/inspect/GetByteOffset.py
pipasic_src/inspect/Global.py
pipasic_src/inspect/InVitroModifications.txt
pipasic_src/inspect/InVivoModifications.txt
pipasic_src/inspect/Inspect.exe
pipasic_src/inspect/Inspect.sln
pipasic_src/inspect/Inspect.vcproj
pipasic_src/inspect/InspectToPepXML.py
pipasic_src/inspect/IsotopePatterns.txt
pipasic_src/inspect/LDA.py
pipasic_src/inspect/Label.py
pipasic_src/inspect/Learning.py
pipasic_src/inspect/MQScoreLDA2.model
pipasic_src/inspect/MQScoreLDA3.model
pipasic_src/inspect/MQScoreSVM2.model
pipasic_src/inspect/MQScoreSVM2.range
pipasic_src/inspect/MQScoreSVM3.model
pipasic_src/inspect/MQScoreSVM3.range
pipasic_src/inspect/MSSpectrum.py
pipasic_src/inspect/MakeImage.py
pipasic_src/inspect/Makefile
pipasic_src/inspect/PLSUtils.py
pipasic_src/inspect/PMCLDA1.model
pipasic_src/inspect/PMCLDA2.model
pipasic_src/inspect/PMCLDA2Phos.model
pipasic_src/inspect/PMCLDA3.model
pipasic_src/inspect/PMCLDA3Phos.model
pipasic_src/inspect/PRM2.bn
pipasic_src/inspect/PRM2.dat
pipasic_src/inspect/PRM3.bn
pipasic_src/inspect/PRM3.dat
pipasic_src/inspect/PRMQ2.dat
pipasic_src/inspect/PRMQ3.dat
pipasic_src/inspect/PTMAnalysis.py
pipasic_src/inspect/PTMChooserLM.py
pipasic_src/inspect/PTMDatabase.txt
pipasic_src/inspect/PTMSearchBigDB.py
pipasic_src/inspect/PTMods.txt
pipasic_src/inspect/ParseXML.py
pipasic_src/inspect/PhosCut2.bn
pipasic_src/inspect/PhosCut3.bn
pipasic_src/inspect/PhosphateLocalization.py
pipasic_src/inspect/PrepDB.py
pipasic_src/inspect/ProteinGrouper.py
pipasic_src/inspect/PyInspect.pyd
pipasic_src/inspect/PySVM.pyd
pipasic_src/inspect/ReleaseFiles.txt
pipasic_src/inspect/ReleasePyInspect.py
pipasic_src/inspect/ReleasePySVM.py
pipasic_src/inspect/ResultsParser.py
pipasic_src/inspect/RunPySVM.py
pipasic_src/inspect/Score.py
pipasic_src/inspect/ScoringModel.dat
pipasic_src/inspect/SelectProteins.py
pipasic_src/inspect/ShuffleDB.py
pipasic_src/inspect/SpectralSimilarity.py
pipasic_src/inspect/StripPTM.py
pipasic_src/inspect/Summary.py
pipasic_src/inspect/SystemTest.py
pipasic_src/inspect/TAG2.bn
pipasic_src/inspect/TAG3.bn
pipasic_src/inspect/TagSkewScores.dat
pipasic_src/inspect/TrainPTMFeatures.py
pipasic_src/inspect/TrieUtils.py
pipasic_src/inspect/Utils.py
pipasic_src/inspect/inspect
pipasic_src/inspect/PyInspect/PyInspect.c
pipasic_src/inspect/PyInspect/PySpectrum.c
pipasic_src/inspect/PyInspect/PySpectrum.h
pipasic_src/inspect/PyInspect/PyUtils.c
pipasic_src/inspect/PyInspect/PyUtils.h
pipasic_src/inspect/PySVM/PySVM.c
pipasic_src/inspect/PySVM/PySVM.sln
pipasic_src/inspect/PySVM/PySVM.vcproj
pipasic_src/inspect/PySVM/svm-predict.c
pipasic_src/inspect/PySVM/svm.cpp
pipasic_src/inspect/PySVM/svm.h
pipasic_src/inspect/docs/Analysis.html
pipasic_src/inspect/docs/Copyright.html
pipasic_src/inspect/docs/Database.html
pipasic_src/inspect/docs/InspectTutorial.pdf
pipasic_src/inspect/docs/Installation.html
pipasic_src/inspect/docs/MS2DB.html
pipasic_src/inspect/docs/PLSTutorial.pdf
pipasic_src/inspect/docs/RunningInspectOnTheFWGrid.pdf
pipasic_src/inspect/docs/Searching.html
pipasic_src/inspect/docs/UnrestrictedSearchTutorial.pdf
pipasic_src/inspect/docs/index.html