MANIFEST.in
README.md
setup.cfg
setup.py
pipasic.egg-info/PKG-INFO
pipasic.egg-info/SOURCES.txt
pipasic.egg-info/dependency_links.txt
pipasic.egg-info/entry_points.txt
pipasic.egg-info/requires.txt
pipasic.egg-info/top_level.txt
src/PASiC.py
src/TideProcessing.py
src/__init__.py
src/inspectparser.py
src/pipasic.py
src/plotting.py
src/readMGF.py
src/runInspect_user_config.py
src/simulation_based_similarity.py
src/trypticpeptides.py
src/config_files/config_Inspect_MSSim.txt
src/config_files/config_Inspect_MSSim_py.txt
src/config_files/config_Inspect_py.txt
src/config_files/config_MSSim_v1_9_short.ini
src/config_files/song.txt
src/inspect/.DS_Store
src/inspect/AdjustPTM.py
src/inspect/AminoAcidMasses.txt
src/inspect/BN.c
src/inspect/BN.h
src/inspect/BasicStats.py
src/inspect/BuildConsensusSpectrum.py
src/inspect/BuildInspect.py
src/inspect/BuildMGF.py
src/inspect/BuildMS2DB.c
src/inspect/BuildMS2DB.h
src/inspect/BuildMS2DB.jar
src/inspect/CCSVM1.model
src/inspect/CCSVM1.range
src/inspect/CCSVM2.model
src/inspect/CCSVM2.range
src/inspect/CCSVM2Phos.model
src/inspect/CCSVM2Phos.range
src/inspect/CMemLeak.c
src/inspect/CMemLeak.h
src/inspect/Ch2BNPEP.dat
src/inspect/Ch2BNPEPQ.dat
src/inspect/Ch3BNPEP.dat
src/inspect/Ch3BNPEPQ.dat
src/inspect/ChargeState.c
src/inspect/ChargeState.h
src/inspect/CombinePTMFeatures.py
src/inspect/CompareHEKPTM.py
src/inspect/ComputeFDR.jar
src/inspect/ComputeFScore.py
src/inspect/ComputePTMFeatures.py
src/inspect/Errors.c
src/inspect/Errors.h
src/inspect/ExonGraphAlign.c
src/inspect/ExonGraphAlign.h
src/inspect/ExplainPTMs.py
src/inspect/FDRUtils.py
src/inspect/FreeMod.c
src/inspect/FreeMod.h
src/inspect/GetByteOffset.py
src/inspect/Global.py
src/inspect/InVitroModifications.txt
src/inspect/InVivoModifications.txt
src/inspect/Inspect.exe
src/inspect/Inspect.h
src/inspect/Inspect.sln
src/inspect/Inspect.vcproj
src/inspect/InspectToPepXML.py
src/inspect/IonScoring.c
src/inspect/IonScoring.h
src/inspect/IsotopePatterns.txt
src/inspect/LDA.c
src/inspect/LDA.h
src/inspect/LDA.py
src/inspect/Label.py
src/inspect/Learning.py
src/inspect/MQScoreLDA2.model
src/inspect/MQScoreLDA3.model
src/inspect/MQScoreSVM2.model
src/inspect/MQScoreSVM2.range
src/inspect/MQScoreSVM3.model
src/inspect/MQScoreSVM3.range
src/inspect/MS2DB.c
src/inspect/MS2DB.h
src/inspect/MS2DBShuffler.jar
src/inspect/MSSpectrum.py
src/inspect/MakeImage.py
src/inspect/Makefile
src/inspect/Mods.c
src/inspect/Mods.h
src/inspect/PLSUtils.py
src/inspect/PMCLDA1.model
src/inspect/PMCLDA2.model
src/inspect/PMCLDA2Phos.model
src/inspect/PMCLDA3.model
src/inspect/PMCLDA3Phos.model
src/inspect/PRM2.bn
src/inspect/PRM2.dat
src/inspect/PRM3.bn
src/inspect/PRM3.dat
src/inspect/PRMQ2.dat
src/inspect/PRMQ3.dat
src/inspect/PTMAnalysis.py
src/inspect/PTMChooserLM.py
src/inspect/PTMDatabase.txt
src/inspect/PTMSearchBigDB.py
src/inspect/PTMods.txt
src/inspect/PValue.c
src/inspect/PValue.h
src/inspect/ParentMass.c
src/inspect/ParentMass.h
src/inspect/ParseInput.c
src/inspect/ParseInput.h
src/inspect/ParseXML.c
src/inspect/ParseXML.h
src/inspect/ParseXML.py
src/inspect/PhosCut2.bn
src/inspect/PhosCut3.bn
src/inspect/PhosphateLocalization.py
src/inspect/PrepDB.py
src/inspect/ProteinGrouper.py
src/inspect/PyInspect.pyd
src/inspect/PySVM.pyd
src/inspect/ReleaseFiles.txt
src/inspect/ReleasePyInspect.py
src/inspect/ReleasePySVM.py
src/inspect/ResultsParser.py
src/inspect/Run.c
src/inspect/Run.h
src/inspect/RunPySVM.py
src/inspect/SNP.c
src/inspect/SNP.h
src/inspect/SVM.c
src/inspect/SVM.h
src/inspect/Score.c
src/inspect/Score.h
src/inspect/Score.py
src/inspect/ScoringModel.dat
src/inspect/Scorpion.c
src/inspect/Scorpion.h
src/inspect/SelectProteins.py
src/inspect/ShuffleDB.py
src/inspect/SpectralSimilarity.py
src/inspect/Spectrum.c
src/inspect/Spectrum.h
src/inspect/SpliceDB.c
src/inspect/SpliceDB.h
src/inspect/SpliceScan.c
src/inspect/SpliceScan.h
src/inspect/Spliced.c
src/inspect/Spliced.h
src/inspect/StripPTM.py
src/inspect/Summary.py
src/inspect/SystemTest.py
src/inspect/TAG2.bn
src/inspect/TAG3.bn
src/inspect/TagFile.c
src/inspect/TagFile.h
src/inspect/TagSkewScores.dat
src/inspect/Tagger.c
src/inspect/Tagger.h
src/inspect/TrainPTMFeatures.py
src/inspect/Trie.c
src/inspect/Trie.h
src/inspect/TrieUtils.py
src/inspect/Utils.c
src/inspect/Utils.h
src/inspect/Utils.py
src/inspect/base64.c
src/inspect/base64.h
src/inspect/inspect
src/inspect/main.c
src/inspect/PyInspect/PyInspect.c
src/inspect/PyInspect/PySpectrum.c
src/inspect/PyInspect/PySpectrum.h
src/inspect/PyInspect/PyUtils.c
src/inspect/PyInspect/PyUtils.h
src/inspect/PySVM/PySVM.c
src/inspect/PySVM/PySVM.sln
src/inspect/PySVM/PySVM.vcproj
src/inspect/PySVM/svm-predict.c
src/inspect/PySVM/svm.cpp
src/inspect/PySVM/svm.h