.coveragerc
.gitignore
CONTRIBUTING.md
LICENSE
README.md
mkdocs.yml
requirements.txt
setup.cfg
setup.py
.github/workflows/docs.yml
.github/workflows/tests.yml
docs/Makefile
docs/README.md
docs/example1.png
docs/index.md
docs/make.bat
docs/requirements.txt
docs/API/sequence.md
docs/API/tree.md
docs/source/api-documentation.rst
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
examples/sequence annotation.ipynb
examples/sequence collection.ipynb
examples/tree.ipynb
examples/data/HCT.fasta
examples/data/genemodel.gff3
examples/data/genemodel.json
examples/data/multiple_sequence_alignment.fasta
examples/data/multiple_sequence_alignment.json
examples/data/tree.json
examples/data/tree.newick
picea/__init__.py
picea/sequence.py
picea/tree.py
picea.egg-info/PKG-INFO
picea.egg-info/SOURCES.txt
picea.egg-info/dependency_links.txt
picea.egg-info/requires.txt
picea.egg-info/top_level.txt
tests/annotation_tests.py
tests/sequence_tests.py
tests/tree_tests.py