LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/picai_baseline/__init__.py
src/picai_baseline/__main__.py
src/picai_baseline/prepare_data.py
src/picai_baseline/prepare_data_semi_supervised.py
src/picai_baseline.egg-info/PKG-INFO
src/picai_baseline.egg-info/SOURCES.txt
src/picai_baseline.egg-info/dependency_links.txt
src/picai_baseline.egg-info/not-zip-safe
src/picai_baseline.egg-info/requires.txt
src/picai_baseline.egg-info/top_level.txt
src/picai_baseline/nnunet/__init__.py
src/picai_baseline/nnunet/eval.py
src/picai_baseline/nnunet/nnunet_baseline.py
src/picai_baseline/nnunet/softmax_export.py
src/picai_baseline/nnunet/training_docker/__init__.py
src/picai_baseline/nnunet/training_docker/focal_loss.py
src/picai_baseline/nnunet/training_docker/io.py
src/picai_baseline/nnunet/training_docker/nnUNetTrainerV2_Loss_CE_checkpoints.py
src/picai_baseline/nnunet/training_docker/nnUNetTrainerV2_Loss_FL_and_CE.py
src/picai_baseline/nnunet/training_docker/nnUNetTrainerV2_focalLoss.py
src/picai_baseline/nnunet/training_docker/nnunet_wrapper.py
src/picai_baseline/nnunet/training_docker/run_training.py
src/picai_baseline/splits/__init__.py
src/picai_baseline/splits/picai/__init__.py
src/picai_baseline/splits/picai/__main__.py
src/picai_baseline/splits/picai/ds-config-train-fold-0.json
src/picai_baseline/splits/picai/ds-config-train-fold-1.json
src/picai_baseline/splits/picai/ds-config-train-fold-2.json
src/picai_baseline/splits/picai/ds-config-train-fold-3.json
src/picai_baseline/splits/picai/ds-config-train-fold-4.json
src/picai_baseline/splits/picai/ds-config-valid-fold-0.json
src/picai_baseline/splits/picai/ds-config-valid-fold-1.json
src/picai_baseline/splits/picai/ds-config-valid-fold-2.json
src/picai_baseline/splits/picai/ds-config-valid-fold-3.json
src/picai_baseline/splits/picai/ds-config-valid-fold-4.json
src/picai_baseline/splits/picai/splits.json
src/picai_baseline/splits/picai_debug/__init__.py
src/picai_baseline/splits/picai_debug/__main__.py
src/picai_baseline/splits/picai_debug/ds-config-train-fold-0.json
src/picai_baseline/splits/picai_debug/ds-config-train-fold-1.json
src/picai_baseline/splits/picai_debug/ds-config-train-fold-2.json
src/picai_baseline/splits/picai_debug/ds-config-train-fold-3.json
src/picai_baseline/splits/picai_debug/ds-config-train-fold-4.json
src/picai_baseline/splits/picai_debug/ds-config-valid-fold-0.json
src/picai_baseline/splits/picai_debug/ds-config-valid-fold-1.json
src/picai_baseline/splits/picai_debug/ds-config-valid-fold-2.json
src/picai_baseline/splits/picai_debug/ds-config-valid-fold-3.json
src/picai_baseline/splits/picai_debug/ds-config-valid-fold-4.json
src/picai_baseline/splits/picai_debug/splits.json
src/picai_baseline/splits/picai_nnunet/__init__.py
src/picai_baseline/splits/picai_nnunet/__main__.py
src/picai_baseline/splits/picai_nnunet/splits.json
src/picai_baseline/splits/picai_pubpriv/__init__.py
src/picai_baseline/splits/picai_pubpriv/__main__.py
src/picai_baseline/splits/picai_pubpriv/ds-config-train-fold-0.json
src/picai_baseline/splits/picai_pubpriv/ds-config-train-fold-1.json
src/picai_baseline/splits/picai_pubpriv/ds-config-train-fold-2.json
src/picai_baseline/splits/picai_pubpriv/ds-config-train-fold-3.json
src/picai_baseline/splits/picai_pubpriv/ds-config-train-fold-4.json
src/picai_baseline/splits/picai_pubpriv/ds-config-valid-fold-0.json
src/picai_baseline/splits/picai_pubpriv/ds-config-valid-fold-1.json
src/picai_baseline/splits/picai_pubpriv/ds-config-valid-fold-2.json
src/picai_baseline/splits/picai_pubpriv/ds-config-valid-fold-3.json
src/picai_baseline/splits/picai_pubpriv/ds-config-valid-fold-4.json
src/picai_baseline/splits/picai_pubpriv/splits.json
src/picai_baseline/splits/picai_pubpriv_nnunet/__init__.py
src/picai_baseline/splits/picai_pubpriv_nnunet/__main__.py
src/picai_baseline/splits/picai_pubpriv_nnunet/splits.json
src/picai_baseline/unet/__init__.py
src/picai_baseline/unet/plan_overview.py
src/picai_baseline/unet/train.py
src/picai_baseline/unet/training_setup/__init__.py
src/picai_baseline/unet/training_setup/callbacks.py
src/picai_baseline/unet/training_setup/compute_spec.py
src/picai_baseline/unet/training_setup/data_generator.py
src/picai_baseline/unet/training_setup/default_hyperparam.py
src/picai_baseline/unet/training_setup/image_reader.py
src/picai_baseline/unet/training_setup/neural_network_selector.py
src/picai_baseline/unet/training_setup/poly_lr.py
src/picai_baseline/unet/training_setup/preprocess_utils.py
src/picai_baseline/unet/training_setup/augmentations/__init__.py
src/picai_baseline/unet/training_setup/augmentations/multi_threaded_augmenter.py
src/picai_baseline/unet/training_setup/augmentations/nnUNet_DA.py
src/picai_baseline/unet/training_setup/augmentations/single_threaded_augmenter.py
src/picai_baseline/unet/training_setup/augmentations/test_time_augmentations.py
src/picai_baseline/unet/training_setup/loss_functions/__init__.py
src/picai_baseline/unet/training_setup/loss_functions/focal.py
src/picai_baseline/unet/training_setup/neural_networks/__init__.py
src/picai_baseline/unet/training_setup/neural_networks/unets.py