LICENSE.md
README.md
pyproject.toml
src/phylozoo/__init__.py
src/phylozoo.egg-info/PKG-INFO
src/phylozoo.egg-info/SOURCES.txt
src/phylozoo.egg-info/dependency_links.txt
src/phylozoo.egg-info/requires.txt
src/phylozoo.egg-info/top_level.txt
src/phylozoo/core/__init__.py
src/phylozoo/core/dnetwork.py
src/phylozoo/core/sdnetwork.py
src/phylozoo/core/distance/__init__.py
src/phylozoo/core/distance/base.py
src/phylozoo/core/distance/classifications.py
src/phylozoo/core/distance/io.py
src/phylozoo/core/distance/operations.py
src/phylozoo/core/network/__init__.py
src/phylozoo/core/network/dnetwork/__init__.py
src/phylozoo/core/network/dnetwork/_enewick.py
src/phylozoo/core/network/dnetwork/_utils.py
src/phylozoo/core/network/dnetwork/base.py
src/phylozoo/core/network/dnetwork/classifications.py
src/phylozoo/core/network/dnetwork/conversions.py
src/phylozoo/core/network/dnetwork/derivations.py
src/phylozoo/core/network/dnetwork/features.py
src/phylozoo/core/network/dnetwork/io.py
src/phylozoo/core/network/dnetwork/isomorphism.py
src/phylozoo/core/network/dnetwork/transformations.py
src/phylozoo/core/network/dnetwork/generator/__init__.py
src/phylozoo/core/network/dnetwork/generator/attachment.py
src/phylozoo/core/network/dnetwork/generator/base.py
src/phylozoo/core/network/dnetwork/generator/construction.py
src/phylozoo/core/network/dnetwork/generator/side.py
src/phylozoo/core/network/sdnetwork/__init__.py
src/phylozoo/core/network/sdnetwork/_utils.py
src/phylozoo/core/network/sdnetwork/base.py
src/phylozoo/core/network/sdnetwork/classifications.py
src/phylozoo/core/network/sdnetwork/conversions.py
src/phylozoo/core/network/sdnetwork/derivations.py
src/phylozoo/core/network/sdnetwork/features.py
src/phylozoo/core/network/sdnetwork/io.py
src/phylozoo/core/network/sdnetwork/isomorphism.py
src/phylozoo/core/network/sdnetwork/sd_phynetwork.py
src/phylozoo/core/network/sdnetwork/transformations.py
src/phylozoo/core/network/sdnetwork/generator/__init__.py
src/phylozoo/core/network/sdnetwork/generator/attachment.py
src/phylozoo/core/network/sdnetwork/generator/base.py
src/phylozoo/core/network/sdnetwork/generator/construction.py
src/phylozoo/core/network/sdnetwork/generator/side.py
src/phylozoo/core/primitives/__init__.py
src/phylozoo/core/primitives/circular_ordering.py
src/phylozoo/core/primitives/partition.py
src/phylozoo/core/primitives/d_multigraph/__init__.py
src/phylozoo/core/primitives/d_multigraph/base.py
src/phylozoo/core/primitives/d_multigraph/conversions.py
src/phylozoo/core/primitives/d_multigraph/features.py
src/phylozoo/core/primitives/d_multigraph/io.py
src/phylozoo/core/primitives/d_multigraph/isomorphism.py
src/phylozoo/core/primitives/d_multigraph/transformations.py
src/phylozoo/core/primitives/m_multigraph/__init__.py
src/phylozoo/core/primitives/m_multigraph/base.py
src/phylozoo/core/primitives/m_multigraph/conversions.py
src/phylozoo/core/primitives/m_multigraph/features.py
src/phylozoo/core/primitives/m_multigraph/io.py
src/phylozoo/core/primitives/m_multigraph/isomorphism.py
src/phylozoo/core/primitives/m_multigraph/transformations.py
src/phylozoo/core/quartet/__init__.py
src/phylozoo/core/quartet/base.py
src/phylozoo/core/quartet/qdistance.py
src/phylozoo/core/quartet/qprofile.py
src/phylozoo/core/quartet/qprofileset.py
src/phylozoo/core/sequence/__init__.py
src/phylozoo/core/sequence/base.py
src/phylozoo/core/sequence/bootstrap.py
src/phylozoo/core/sequence/distances.py
src/phylozoo/core/sequence/io.py
src/phylozoo/core/split/__init__.py
src/phylozoo/core/split/algorithms.py
src/phylozoo/core/split/base.py
src/phylozoo/core/split/classifications.py
src/phylozoo/core/split/io.py
src/phylozoo/core/split/splitsystem.py
src/phylozoo/core/split/weighted_splitsystem.py
src/phylozoo/utils/__init__.py
src/phylozoo/utils/parallel.py
src/phylozoo/utils/validation.py
src/phylozoo/utils/exceptions/__init__.py
src/phylozoo/utils/exceptions/algorithm.py
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src/phylozoo/utils/exceptions/generator.py
src/phylozoo/utils/exceptions/io.py
src/phylozoo/utils/exceptions/network.py
src/phylozoo/utils/exceptions/utils.py
src/phylozoo/utils/exceptions/visualization.py
src/phylozoo/utils/exceptions/warning.py
src/phylozoo/utils/io/__init__.py
src/phylozoo/utils/io/file_ops.py
src/phylozoo/utils/io/mixin.py
src/phylozoo/utils/io/registry.py
src/phylozoo/utils/io/format_utils/__init__.py
src/phylozoo/utils/io/format_utils/nexus.py
src/phylozoo/utils/io/format_utils/phylip.py
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src/phylozoo/viz/_matplotlib.py
src/phylozoo/viz/_render.py
src/phylozoo/viz/_types.py
src/phylozoo/viz/plot.py
src/phylozoo/viz/d_multigraph/__init__.py
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src/phylozoo/viz/dnetwork/plot.py
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src/phylozoo/viz/dnetwork/layout/__init__.py
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src/phylozoo/viz/m_multigraph/__init__.py
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src/phylozoo/viz/sdnetwork/plot.py
src/phylozoo/viz/sdnetwork/style.py
src/phylozoo/viz/sdnetwork/layout/__init__.py
src/phylozoo/viz/sdnetwork/layout/base.py
src/phylozoo/viz/sdnetwork/layout/nx.py
src/phylozoo/viz/sdnetwork/layout/radial.py
src/phylozoo/viz/sdnetwork/layout/routes.py