LICENSE
README.md
pyproject.toml
src/phylox/__init__.py
src/phylox/base.py
src/phylox/constants.py
src/phylox/dinetwork.py
src/phylox/parser.py
src/phylox.egg-info/PKG-INFO
src/phylox.egg-info/SOURCES.txt
src/phylox.egg-info/dependency_links.txt
src/phylox.egg-info/entry_points.txt
src/phylox.egg-info/requires.txt
src/phylox.egg-info/top_level.txt
src/phylox/cherrypicking/Heuristic_Main_UserFriendly.py
src/phylox/cherrypicking/__init__.py
src/phylox/cherrypicking/base.py
src/phylox/cherrypicking/best_subnetwork.py
src/phylox/cherrypicking/combining_networks.py
src/phylox/cherrypicking/tree_child_sequences.py
src/phylox/classes/__init__.py
src/phylox/classes/dinetwork.py
src/phylox/classes/networkclass.py
src/phylox/exceptions/__init__.py
src/phylox/exceptions/invalidmovedefinitionexception.py
src/phylox/exceptions/invalidmoveexception.py
src/phylox/exceptions/nosolutionexception.py
src/phylox/exceptions/timeoutexception.py
src/phylox/generators/__init__.py
src/phylox/generators/heath/heath.py
src/phylox/generators/heath/heath_cli.py
src/phylox/generators/lgt/__init__.py
src/phylox/generators/lgt/base.py
src/phylox/generators/mcmc/__init__.py
src/phylox/generators/mcmc/base.py
src/phylox/generators/randomTC/__init__.py
src/phylox/generators/randomTC/random_tc_network.py
src/phylox/generators/trees/__init__.py
src/phylox/generators/trees/add_edges.py
src/phylox/generators/trees/beta_splitting_tree.py
src/phylox/generators/trees/well_known.py
src/phylox/generators/zods/__init__.py
src/phylox/generators/zods/zods.py
src/phylox/generators/zods/zods_cli.py
src/phylox/isomorphism/__init__.py
src/phylox/isomorphism/base.py
src/phylox/networkproperties/__init__.py
src/phylox/networkproperties/properties.py
src/phylox/rearrangement/__init__.py
src/phylox/rearrangement/invertsequence.py
src/phylox/rearrangement/movability.py
src/phylox/rearrangement/move.py
src/phylox/rearrangement/movetype.py
src/phylox/rearrangement/rearrangementproblem.py
src/phylox/rearrangement/exact_distance/__init__.py
src/phylox/rearrangement/exact_distance/base.py
src/phylox/rearrangement/heuristics/__init__.py
src/phylox/rearrangement/heuristics/cli_main.py
src/phylox/rearrangement/heuristics/green_line_heuristic.py
src/phylox/rearrangement/heuristics/red_line_heuristic.py
src/phylox/rearrangement/heuristics/utils.py
tests/test_dinetwork.py
tests/test_parser.py