LICENSE
README.md
pyproject.toml
src/phylox/__init__.py
src/phylox/base.py
src/phylox/dinetwork.py
src/phylox/parser.py
src/phylox.egg-info/PKG-INFO
src/phylox.egg-info/SOURCES.txt
src/phylox.egg-info/dependency_links.txt
src/phylox.egg-info/top_level.txt
src/phylox/cherrypicking/CPH.py
src/phylox/cherrypicking/Heuristic_Main_UserFriendly.py
src/phylox/cherrypicking/NetworkContainment.py
src/phylox/cherrypicking/__init__.py
src/phylox/cherrypicking/base.py
src/phylox/classes/__init__.py
src/phylox/classes/dinetwork.py
src/phylox/classes/networkclass.py
src/phylox/exceptions/__init__.py
src/phylox/exceptions/invalidmovedefinitionexception.py
src/phylox/exceptions/invalidmoveexception.py
src/phylox/generators/__init__.py
src/phylox/generators/betasplitting/BetaSplittingModelTree.py
src/phylox/generators/betasplitting/BetaSplittingNetwork_Main.py
src/phylox/generators/betasplitting/BetaSplittingNetwork_Tools.py
src/phylox/generators/betasplitting/MakeCatAndBalancedWithEdges.py
src/phylox/generators/betasplitting/MakeNetworksBeta.py
src/phylox/generators/heath/heath.py
src/phylox/generators/lgt/Generator.py
src/phylox/generators/mcmc/__init__.py
src/phylox/generators/mcmc/base.py
src/phylox/generators/randomTC/RandomNetworks.py
src/phylox/generators/zods/zods.py
src/phylox/isomorphism/__init__.py
src/phylox/isomorphism/base.py
src/phylox/networkproperties/properties.py
src/phylox/rearrangement/__init__.py
src/phylox/rearrangement/invertsequence.py
src/phylox/rearrangement/movability.py
src/phylox/rearrangement/move.py
src/phylox/rearrangement/movetype.py
src/phylox/rearrangement/rearrangementproblem.py
src/phylox/rearrangement/exact_distance/__init__.py
src/phylox/rearrangement/exact_distance/base.py
src/phylox/rearrangement/heuristics/__init__.py
src/phylox/rearrangement/heuristics/cli_main.py
src/phylox/rearrangement/heuristics/green_line_heuristic.py
src/phylox/rearrangement/heuristics/heuristic_tools.py
src/phylox/rearrangement/heuristics/red_line_heuristic.py
tests/test_dinetwork.py