Metadata-Version: 2.1
Name: phylovega
Version: 0.2
Summary: Interactive Phylogenetic trees in Vega from Python.
Home-page: https://github.com/Zsailer/phylovega
Author: Zach Sailer
Author-email: zachsailer@gmail.com
License: MIT
Description: 
        # PhyloVega
        
        **Visualize phylogenetic trees in Vega from Python.**
        
        Declarative tree visualizations in Python powered by Vega.
        
        **Declarative Grammar**
        
        ```python
        from phylovega import TreeChart
        
        # Construct Vega Specification
        chart = TreeChart.read_newick(
            'tree.newick',
            height_scale=200,
        
            # Node attributes
            node_size=200,
            node_color="#ccc",
        
            # Leaf attributes
            leaf_labels="id",
        
            # Edge attributes
            edge_width=2,
            edge_color="#000",
        )
        ```
        
        
        ![](docs/static-example.png)
        
        **Interactive trees**
        
        Use Vega grammar
        
        ![](docs/phylovega.gif)
        
        ## How does it work?
        
        PhyloVega defines a Vega grammar (specifically, a set of transforms) to draw phylogenetic trees. 
        
        ## Why?
        
        Python is due for a simple, interactive phylogenetic tree viewer. Vega has done
        most of the heavy lifting here. PhyloVega simply leverages Vega transform specifications for building interactive visualizations.
        
        ## In the works
        
        Here is a list of features that will eventually make it into PhyloVega.
        
        * More Interactivity
        * Collapible Clades.
        * Circular trees
        * ... (feel free to add to this list).
        
        ## Install
        
        Get the latest release with `pip`:
        
        ```
        pip install phylovega
        ```
        
        Install the development version by cloning this repo and calling:
        ```
        pip install -e .
        ```
        
        ## Dependencies
        
        PhyloVega uses the Vega4 specification. It works out-of-the-box with JupyterLab. 
        
        * [JupyterLab](): The next generation Jupyter notebook.
        * [PhyloPandas](https://github.com/Zsailer/phylopandass): Pandas DataFrame for Phylogenetics
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Requires-Python: >=3.4.0
Description-Content-Type: text/markdown
