from phylogenie.draw import (
    draw_colored_dated_tree_categorical,
    draw_colored_dated_tree_continuous,
    draw_colored_tree_categorical,
    draw_colored_tree_continuous,
    draw_dated_tree,
    draw_tree,
)
from phylogenie.io import dump_fasta, dump_newick, load_fasta, load_newick, load_nexus
from phylogenie.main import run
from phylogenie.msa import MSA, Sequence
from phylogenie.skyline import (
    SkylineMatrix,
    SkylineMatrixCoercible,
    SkylineParameter,
    SkylineParameterLike,
    SkylineVector,
    SkylineVectorCoercible,
    SkylineVectorLike,
    skyline_matrix,
    skyline_parameter,
    skyline_vector,
)
from phylogenie.tree_node import TreeNode

__all__ = [
    "draw_colored_dated_tree_categorical",
    "draw_colored_dated_tree_continuous",
    "draw_colored_tree_categorical",
    "draw_colored_tree_continuous",
    "draw_dated_tree",
    "draw_tree",
    "dump_fasta",
    "dump_newick",
    "load_fasta",
    "load_newick",
    "load_nexus",
    "run",
    "MSA",
    "Sequence",
    "SkylineMatrix",
    "SkylineMatrixCoercible",
    "SkylineParameter",
    "SkylineParameterLike",
    "SkylineVector",
    "SkylineVectorCoercible",
    "SkylineVectorLike",
    "skyline_matrix",
    "skyline_parameter",
    "skyline_vector",
    "TreeNode",
]
