from phylogenie.treesimulator.events import (
    Birth,
    BirthWithContactTracing,
    Death,
    Event,
    EventType,
    Migration,
    Mutation,
    Sampling,
    SamplingWithContactTracing,
    get_BD_events,
    get_BDEI_events,
    get_BDSS_events,
    get_canonical_events,
    get_contact_tracing_events,
    get_epidemiological_events,
    get_FBD_events,
    get_mutation_id,
)
from phylogenie.treesimulator.features import Feature, set_features
from phylogenie.treesimulator.gillespie import generate_trees, simulate_tree
from phylogenie.treesimulator.io import dump_newick, load_newick, load_nexus
from phylogenie.treesimulator.model import get_node_state
from phylogenie.treesimulator.tree import Tree
from phylogenie.treesimulator.utils import (
    compute_mean_leaf_pairwise_distance,
    compute_sackin_index,
    get_distance,
    get_mrca,
    get_node_depth_levels,
    get_node_depths,
    get_node_height_levels,
    get_node_heights,
    get_node_leaf_counts,
)

__all__ = [
    "Birth",
    "BirthWithContactTracing",
    "Death",
    "Event",
    "EventType",
    "Migration",
    "Mutation",
    "Sampling",
    "SamplingWithContactTracing",
    "get_BD_events",
    "get_BDEI_events",
    "get_BDSS_events",
    "get_canonical_events",
    "get_contact_tracing_events",
    "get_epidemiological_events",
    "get_FBD_events",
    "get_mutation_id",
    "Feature",
    "set_features",
    "simulate_tree",
    "dump_newick",
    "load_newick",
    "load_nexus",
    "generate_trees",
    "get_node_state",
    "Tree",
    "compute_mean_leaf_pairwise_distance",
    "compute_sackin_index",
    "get_distance",
    "get_mrca",
    "get_node_depth_levels",
    "get_node_depths",
    "get_node_height_levels",
    "get_node_heights",
    "get_node_leaf_counts",
]
