MANIFEST.in
README.md
pyproject.toml
setup.py
./src/phybers/clustering/ffclust/BundleTools.c
./src/phybers/clustering/ffclust/c_wrappers.c
./src/phybers/clustering/ffclust/segmentation.c
./src/phybers/clustering/hclust/BundleTools.cpp
./src/phybers/clustering/hclust/c_wrappers.cpp
./src/phybers/clustering/hclust/distances.cpp
./src/phybers/fibervis/FiberVis_core/AtlasBasedParallelSegmentation.c
./src/phybers/fibervis/FiberVis_core/FiberVis_core.c
./src/phybers/fibervis/FiberVis_core/PointOctree.c
./src/phybers/fibervis/FiberVis_core/bundleMethods.c
./src/phybers/fibervis/FiberVis_core/miscellaneous.c
./src/phybers/segment/fiberseg/BundleTools.cpp
./src/phybers/segment/fiberseg/c_wrappers.cpp
./src/phybers/segment/fiberseg/main.cpp
./src/phybers/utils/deform/BundleTools.c
./src/phybers/utils/deform/c_wrappers.c
./src/phybers/utils/deform/main.c
./src/phybers/utils/intersection/BundleTools.c
./src/phybers/utils/intersection/c_wrappers.c
./src/phybers/utils/intersection/fiberDistanceMax2bun.c
./src/phybers/utils/postprocessing/BundleTools.cpp
./src/phybers/utils/postprocessing/c_wrappers.cpp
./src/phybers/utils/postprocessing/dbindex.cpp
./src/phybers/utils/sampling/BundleTools.c
./src/phybers/utils/sampling/c_wrappers.c
./src/phybers/utils/sampling/sliceFibers.c
src/phybers/__init__.py
src/phybers.egg-info/PKG-INFO
src/phybers.egg-info/SOURCES.txt
src/phybers.egg-info/dependency_links.txt
src/phybers.egg-info/entry_points.txt
src/phybers.egg-info/not-zip-safe
src/phybers.egg-info/requires.txt
src/phybers.egg-info/top_level.txt
src/phybers/clustering/__init__.py
src/phybers/clustering/clustering.py
src/phybers/clustering/ffclust/BundleTools.c
src/phybers/clustering/ffclust/FibersTools.py
src/phybers/clustering/ffclust/__init__.py
src/phybers/clustering/ffclust/__main__.py
src/phybers/clustering/ffclust/bundleTools.h
src/phybers/clustering/ffclust/c_wrappers.c
src/phybers/clustering/ffclust/clustering.py
src/phybers/clustering/ffclust/mainFFClust.py
src/phybers/clustering/ffclust/metric.py
src/phybers/clustering/ffclust/processing.py
src/phybers/clustering/ffclust/segmentation.c
src/phybers/clustering/ffclust/segmentation.h
src/phybers/clustering/ffclust/utils.py
src/phybers/clustering/hclust/BundleTools.cpp
src/phybers/clustering/hclust/__init__.py
src/phybers/clustering/hclust/__main__.py
src/phybers/clustering/hclust/bundleTools.hpp
src/phybers/clustering/hclust/c_wrappers.cpp
src/phybers/clustering/hclust/clusterTools.py
src/phybers/clustering/hclust/distances.cpp
src/phybers/clustering/hclust/distances.hpp
src/phybers/clustering/hclust/mainHClust.py
src/phybers/clustering/hclust/read_write_bundle.py
src/phybers/fibervis/FiberVis.py
src/phybers/fibervis/GLContext.py
src/phybers/fibervis/WindowController.py
src/phybers/fibervis/__init__.py
src/phybers/fibervis/__main__.py
src/phybers/fibervis/FiberVis_core/AtlasBasedParallelSegmentation.c
src/phybers/fibervis/FiberVis_core/AtlasBasedParallelSegmentation.h
src/phybers/fibervis/FiberVis_core/FiberVis_core.c
src/phybers/fibervis/FiberVis_core/InPlaceSegmentationMethod.h
src/phybers/fibervis/FiberVis_core/PointOctree.c
src/phybers/fibervis/FiberVis_core/PointOctree.h
src/phybers/fibervis/FiberVis_core/__init__.py
src/phybers/fibervis/FiberVis_core/bundleMethods.c
src/phybers/fibervis/FiberVis_core/bundleMethods.h
src/phybers/fibervis/FiberVis_core/ffclust.c
src/phybers/fibervis/FiberVis_core/ffclust.h
src/phybers/fibervis/FiberVis_core/functions.h
src/phybers/fibervis/FiberVis_core/miscellaneous.c
src/phybers/fibervis/FiberVis_core/miscellaneous.h
src/phybers/fibervis/Framework/BoundingBox.py
src/phybers/fibervis/Framework/Bundle.py
src/phybers/fibervis/Framework/CoordinateSystem.py
src/phybers/fibervis/Framework/MRI.py
src/phybers/fibervis/Framework/Mesh.py
src/phybers/fibervis/Framework/Shaders.py
src/phybers/fibervis/Framework/Slice.py
src/phybers/fibervis/Framework/VisualizationBaseObject.py
src/phybers/fibervis/Framework/Volume.py
src/phybers/fibervis/Framework/__init__.py
src/phybers/fibervis/Framework/Segmentation/AtlasBasedParallelSegmentation.py
src/phybers/fibervis/Framework/Segmentation/FFClustSegmentation.py
src/phybers/fibervis/Framework/Segmentation/InPlaceSegmentation.py
src/phybers/fibervis/Framework/Segmentation/ROI.py
src/phybers/fibervis/Framework/Segmentation/ROISegmentation.py
src/phybers/fibervis/Framework/Segmentation/SegmentationHandler.py
src/phybers/fibervis/Framework/Segmentation/__init__.py
src/phybers/fibervis/Framework/Tools/Camera.py
src/phybers/fibervis/Framework/Tools/DataStructures.py
src/phybers/fibervis/Framework/Tools/Quaternion.py
src/phybers/fibervis/Framework/Tools/__init__.py
src/phybers/fibervis/Framework/Tools/glm.py
src/phybers/fibervis/Framework/Tools/performance.py
src/phybers/fibervis/Framework/Tools/shunting_yard.py
src/phybers/fibervis/Framework/Tools/utilities.py
src/phybers/fibervis/Framework/Tools/visualizationEnums.py
src/phybers/fibervis/shaders/atlasbasedsegmentation.gs
src/phybers/fibervis/shaders/atlasbasedsegmentation.vs
src/phybers/fibervis/shaders/boundingbox.vs
src/phybers/fibervis/shaders/bundle.vs
src/phybers/fibervis/shaders/coordinateSystem.vs
src/phybers/fibervis/shaders/cylinder.gs
src/phybers/fibervis/shaders/cylinder.vs
src/phybers/fibervis/shaders/mesh.vs
src/phybers/fibervis/shaders/quaternion.glsl
src/phybers/fibervis/shaders/segmentation.gs
src/phybers/fibervis/shaders/segmentation.vs
src/phybers/fibervis/shaders/slice.fs
src/phybers/fibervis/shaders/standardFragmentShader.fs
src/phybers/fibervis/shaders/volume-slice.vs
src/phybers/fibervis/shaders/volume.fs
src/phybers/fibervis/ui/__init__.py
src/phybers/fibervis/ui/viewer.ui
src/phybers/fibervis/ui/visualizationObjectsTool.ui
src/phybers/fibervis/ui/Controllers/AtlasBasedParallelSegmentationDialog.py
src/phybers/fibervis/ui/Controllers/FFClustSegmentationDialog.py
src/phybers/fibervis/ui/Controllers/InPlaceSegmentationDialog.py
src/phybers/fibervis/ui/Controllers/ROIsSegmentationDialog.py
src/phybers/fibervis/ui/Controllers/VisDialog.py
src/phybers/fibervis/ui/Controllers/__init__.py
src/phybers/fibervis/ui/Segmentations/AtlasBasedParallelSegmentationDialog.ui
src/phybers/fibervis/ui/Segmentations/FFClustSegmentationDialog.ui
src/phybers/fibervis/ui/Segmentations/InPlaceSegmentationDialog.ui
src/phybers/fibervis/ui/Segmentations/ROIsSegmentationDialog.ui
src/phybers/fibervis/ui/Settings/bgdialog.ui
src/phybers/fibervis/ui/Settings/cameradialog.ui
src/phybers/fibervis/ui/Settings/ilumdialog.ui
src/phybers/segment/__init__.py
src/phybers/segment/__main__.py
src/phybers/segment/read_write_bundle.py
src/phybers/segment/segment.py
src/phybers/segment/fiberseg/BundleTools.cpp
src/phybers/segment/fiberseg/__init__.py
src/phybers/segment/fiberseg/atlas.py
src/phybers/segment/fiberseg/bundleTools.hpp
src/phybers/segment/fiberseg/c_wrappers.cpp
src/phybers/segment/fiberseg/main.cpp
src/phybers/segment/fiberseg/main.hpp
src/phybers/segment/fiberseg/win_dirent.h
src/phybers/utils/FibersTools.py
src/phybers/utils/__init__.py
src/phybers/utils/utilities.py
src/phybers/utils/utils.py
src/phybers/utils/deform/BundleTools.c
src/phybers/utils/deform/__init__.py
src/phybers/utils/deform/bundleTools.h
src/phybers/utils/deform/c_wrappers.c
src/phybers/utils/deform/main.c
src/phybers/utils/deform/main.h
src/phybers/utils/deform/nifti1.h
src/phybers/utils/deform/sliceFibers.c
src/phybers/utils/deform/sliceFibers.h
src/phybers/utils/deform/win_dirent.h
src/phybers/utils/intersection/BundleTools.c
src/phybers/utils/intersection/__init__.py
src/phybers/utils/intersection/__main__.py
src/phybers/utils/intersection/bundleTools.h
src/phybers/utils/intersection/c_wrappers.c
src/phybers/utils/intersection/fiberDistanceMax2bun.c
src/phybers/utils/intersection/fiberDistanceMax2bun.h
src/phybers/utils/intersection/sliceFibers.c
src/phybers/utils/intersection/sliceFibers.h
src/phybers/utils/intersection/win_dirent.h
src/phybers/utils/postprocessing/BundleTools.cpp
src/phybers/utils/postprocessing/__init__.py
src/phybers/utils/postprocessing/bundleTools.hpp
src/phybers/utils/postprocessing/c_wrappers.cpp
src/phybers/utils/postprocessing/dbindex.cpp
src/phybers/utils/postprocessing/dbindex.hpp
src/phybers/utils/postprocessing/win_dirent.h
src/phybers/utils/postprocessing/~dbindex_new.cpp
src/phybers/utils/sampling/BundleTools.c
src/phybers/utils/sampling/__init__.py
src/phybers/utils/sampling/bundleTools.h
src/phybers/utils/sampling/c_wrappers.c
src/phybers/utils/sampling/sliceFibers.c
src/phybers/utils/sampling/sliceFibers.h
src/phybers/utils/sampling/win_dirent.h
test/test_all.py