# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module provides tools for calculating the properties of sources
defined by a segmentation image.
"""

import functools
import inspect
import warnings
from copy import deepcopy

import astropy.units as u
import numpy as np
from astropy.stats import SigmaClip, gaussian_fwhm_to_sigma
from astropy.table import QTable
from astropy.utils import lazyproperty
from astropy.utils.exceptions import AstropyUserWarning

from photutils.aperture import (BoundingBox, CircularAperture,
                                EllipticalAperture, RectangularAnnulus)
from photutils.background import SExtractorBackground
from photutils.centroids import centroid_quadratic
from photutils.segmentation.core import SegmentationImage
from photutils.utils._misc import _get_meta
from photutils.utils._moments import _moments, _moments_central
from photutils.utils._progress_bars import add_progress_bar
from photutils.utils._quantity_helpers import process_quantities
from photutils.utils.cutouts import CutoutImage

__all__ = ['SourceCatalog']
__doctest_requires__ = {('SourceCatalog', 'SourceCatalog.*'): ['scipy']}


# default table columns for `to_table()` output
DEFAULT_COLUMNS = ['label', 'xcentroid', 'ycentroid', 'sky_centroid',
                   'bbox_xmin', 'bbox_xmax', 'bbox_ymin', 'bbox_ymax',
                   'area', 'semimajor_sigma', 'semiminor_sigma',
                   'orientation', 'eccentricity', 'min_value', 'max_value',
                   'local_background', 'segment_flux', 'segment_fluxerr',
                   'kron_flux', 'kron_fluxerr']


def as_scalar(method):
    """
    Return a scalar value from a method if the class is scalar.

    Note that lazyproperties that begin with '_' should not have this
    decorator applied. Such properties are assumed to always be iterable
    and when slicing (see __getitem__) from a cached multi-object
    catalog to create a single-object catalog, they will no longer be
    scalar.
    """

    @functools.wraps(method)
    def _as_scalar(*args, **kwargs):
        result = method(*args, **kwargs)
        try:
            return (result[0] if args[0].isscalar and len(result) == 1
                    else result)
        except TypeError:  # if result has no len
            return result

    return _as_scalar


def use_detcat(method):
    """
    Return the value from the detection image catalog instead of
    using the method to calculate it.
    """

    @functools.wraps(method)
    def _use_detcat(self, *args, **kwargs):
        if self._detection_cat is None:
            return method(self, *args, **kwargs)
        else:
            return getattr(self._detection_cat, method.__name__)

    return _use_detcat


class SourceCatalog:
    r"""
    Class to create a catalog of photometry and morphological properties
    for sources defined by a segmentation image.

    Parameters
    ----------
    data : 2D `~numpy.ndarray` or `~astropy.units.Quantity`, optional
        The 2D array from which to calculate the source photometry and
        properties. If ``convolved_data`` is input, then a convolved
        version of ``data`` will be used instead of ``data`` to
        calculate the source centroid and morphological properties.
        Source photometry is always measured from ``data``. For
        accurate source properties and photometry, ``data`` should be
        background-subtracted. Non-finite ``data`` values (NaN and inf)
        are automatically masked.

    segment_img : `~photutils.segmentation.SegmentationImage`
        A `~photutils.segmentation.SegmentationImage` object defining
        the sources.

    convolved_data : 2D `~numpy.ndarray` or `~astropy.units.Quantity`, optional
        The 2D array used to calculate the source centroid and
        morphological properties. Typically, ``convolved_data``
        should be the input ``data`` array convolved by the
        same smoothing kernel that was applied to the detection
        image when deriving the source segments (e.g., see
        :func:`~photutils.segmentation.detect_sources`). If
        ``convolved_data`` is `None`, then the unconvolved ``data`` will
        be used instead. Non-finite ``convolved_data`` values (NaN and
        inf) are not automatically masked, unless they are at the same
        position of non-finite values in the input ``data`` array. Such
        pixels can be masked using the ``mask`` keyword.

    error : 2D `~numpy.ndarray` or `~astropy.units.Quantity`, optional
        The total error array corresponding to the input ``data``
        array. ``error`` is assumed to include *all* sources of
        error, including the Poisson error of the sources (see
        `~photutils.utils.calc_total_error`) . ``error`` must have
        the same shape as the input ``data``. If ``data`` is a
        `~astropy.units.Quantity` array then ``error`` must be a
        `~astropy.units.Quantity` array (and vice versa) with identical
        units. Non-finite ``error`` values (NaN and inf) are not
        automatically masked, unless they are at the same position of
        non-finite values in the input ``data`` array. Such pixels can
        be masked using the ``mask`` keyword. See the Notes section
        below for details on the error propagation.

    mask : 2D `~numpy.ndarray` (bool), optional
        A boolean mask with the same shape as ``data`` where a `True`
        value indicates the corresponding element of ``data`` is masked.
        Masked data are excluded from all calculations. Non-finite
        values (NaN and inf) in the input ``data`` are automatically
        masked.


        The 2D kernel used to filter the data prior to calculating
        the source centroid and morphological parameters. The
        kernel should be the same one used in defining the
        source segments, i.e., the detection image (e.g., see
        :func:`~photutils.segmentation.detect_sources`). If `None`, then
        the unfiltered ``data`` will be used instead. This keyword is
        ignored if ``convolved_data`` is input (recommended).

    background : float, 2D `~numpy.ndarray`, or `~astropy.units.Quantity`, optional
        The background level that was *previously* present in the input
        ``data``. ``background`` may either be a scalar value or a 2D
        image with the same shape as the input ``data``. If ``data``
        is a `~astropy.units.Quantity` array then ``background`` must
        be a `~astropy.units.Quantity` array (and vice versa) with
        identical units. Inputing the ``background`` merely allows
        for its properties to be measured within each source segment.
        The input ``background`` does *not* get subtracted from the
        input ``data``, which should already be background-subtracted.
        Non-finite ``background`` values (NaN and inf) are not
        automatically masked, unless they are at the same position of
        non-finite values in the input ``data`` array. Such pixels can
        be masked using the ``mask`` keyword.

    wcs : WCS object or `None`, optional
        A world coordinate system (WCS) transformation that
        supports the `astropy shared interface for WCS
        <https://docs.astropy.org/en/stable/wcs/wcsapi.html>`_ (e.g.,
        `astropy.wcs.WCS`, `gwcs.wcs.WCS`). If `None`, then all
        sky-based properties will be set to `None`. This keyword will be
        ignored if ``detection_cat`` is input.

    localbkg_width : int, optional
        The width of the rectangular annulus used to compute a local
        background around each source. If zero, then no local background
        subtraction is performed. The local background affects the
        ``min_value``, ``max_value``, ``segment_flux``, ``kron_flux``,
        and ``fluxfrac_radius`` properties. It is also used when
        calculating circular and Kron aperture photometry (i.e.,
        `circular_photometry` and `kron_photometry`). It does not affect
        the moment-based morphological properties of the source.

    apermask_method : {'correct', 'mask', 'none'}, optional
        The method used to handle neighboring sources when performing
        aperture photometry (e.g., circular apertures or elliptical Kron
        apertures). This parameter also affects the Kron radius. The
        options are:

          * 'correct': replace pixels assigned to neighboring sources by
            replacing them with pixels on the opposite side of the source
            center (equivalent to MASK_TYPE=CORRECT in SourceExtractor).
          * 'mask': mask pixels assigned to neighboring sources
            (equivalent to MASK_TYPE=BLANK in SourceExtractor).
          * 'none': do not mask any pixels (equivalent to MASK_TYPE=NONE
            in SourceExtractor).

        This keyword will be ignored if ``detection_cat`` is input.

    kron_params : tuple of 2 or 3 floats, optional
        A list of parameters used to determine the Kron aperture.
        The first item is the scaling parameter of the unscaled Kron
        radius and the second item represents the minimum value for
        the unscaled Kron radius in pixels. The optional third item is
        the minimum circular radius in pixels. If ``kron_params[0]``
        * `kron_radius` * sqrt(`semimajor_sigma` * `semiminor_sigma`)
        is less than or equal to this radius, then the Kron aperture
        will be a circle with this minimum radius. This keyword will be
        ignored if ``detection_cat`` is input.

    detection_cat : `SourceCatalog`, optional
        A `SourceCatalog` object for the detection image. The
        segmentation image used to create the detection catalog must
        be the same one input to ``segment_img``. If input, then the
        detection catalog source centroids and morphological/shape
        properties will be returned instead of calculating them
        from the input ``data``. The detection catalog centroids
        and shape properties will also be used to perform aperture
        photometry (i.e., circular and Kron). If ``detection_cat``
        is input, then the input ``wcs``, ``apermask_method``, and
        ``kron_params`` keywords will be ignored. This keyword affects
        `circular_photometry` (including returned apertures), all Kron
        parameters (Kron radius, flux, flux errors, apertures, and
        custom `kron_photometry`), and `fluxfrac_radius` (which is based
        on the Kron flux).

    progress_bar : bool, optional
        Whether to display a progress bar when calculating
        some properties (e.g., ``kron_radius``, ``kron_flux``,
        ``fluxfrac_radius``, ``circular_photometry``, ``centroid_win``,
        ``centroid_quad``). The progress bar requires that the `tqdm
        <https://tqdm.github.io/>`_ optional dependency be installed.
        Note that the progress bar does not currently work in the
        Jupyter console due to limitations in ``tqdm``.

    Notes
    -----
    ``data`` should be background-subtracted for accurate source
    photometry and properties. The previously-subtracted background can
    be passed into this class to calculate properties of the background
    for each source.

    Note that this class does not convert input data in
    surface-brightness units to flux or counts. Conversion from
    surface-brightness units should be performed before using this
    class.

    function returns the sum of the (weighted) input
    ``data`` values within the aperture. It does not convert data in
    surface brightness units to flux or counts.

    `SourceExtractor`_'s centroid and morphological parameters are
    always calculated from a convolved, or filtered, "detection"
    image (``convolved_data``), i.e., the image used to define the
    segmentation image. The usual downside of the filtering is the
    sources will be made more circular than they actually are. If
    you wish to reproduce `SourceExtractor`_ centroid and morphology
    results, then input the ``convolved_data`` If ``convolved_data`` and
    ``kernel`` are both `None`, then the unfiltered ``data`` will be
    used for the source centroid and morphological parameters.

    Negative data values within the source segment are set to zero
    when calculating morphological properties based on image moments.
    Negative values could occur, for example, if the segmentation
    image was defined from a different image (e.g., different
    bandpass) or if the background was oversubtracted. However,
    `~photutils.segmentation.SourceCatalog.segment_flux` always includes
    the contribution of negative ``data`` values.

    The input ``error`` array is assumed to include *all* sources
    of error, including the Poisson error of the sources.
    `~photutils.segmentation.SourceCatalog.segment_fluxerr` is simply
    the quadrature sum of the pixel-wise total errors over the
    unmasked pixels within the source segment:

    .. math:: \Delta F = \sqrt{\sum_{i \in S}
              \sigma_{\mathrm{tot}, i}^2}

    where :math:`\Delta F` is
    `~photutils.segmentation.SourceCatalog.segment_fluxerr`,
    :math:`S` are the unmasked pixels in the source segment, and
    :math:`\sigma_{\mathrm{tot}, i}` is the input ``error`` array.

    Custom errors for source segments can be calculated using
    the `~photutils.segmentation.SourceCatalog.error_ma` and
    `~photutils.segmentation.SourceCatalog.background_ma` properties,
    which are 2D `~numpy.ma.MaskedArray` cutout versions of the input
    ``error`` and ``background`` arrays. The mask is `True` for pixels
    outside of the source segment, masked pixels from the ``mask``
    input, or any non-finite ``data`` values (NaN and inf).

    .. _SourceExtractor: https://sextractor.readthedocs.io/en/latest/
    """

    def __init__(self, data, segment_img, *, convolved_data=None, error=None,
                 mask=None, background=None, wcs=None, localbkg_width=0,
                 apermask_method='correct', kron_params=(2.5, 1.4, 0.0),
                 detection_cat=None, progress_bar=False):

        arrays, unit = process_quantities(
            (data, convolved_data, error, background),
            ('data', 'convolved_data', 'error', 'background'))
        data, convolved_data, error, background = arrays
        self._data_unit = unit
        self._data = self._validate_array(data, 'data', shape=False)
        self._convolved_data = self._validate_array(convolved_data,
                                                    'convolved_data')
        self._segment_img = self._validate_segment_img(segment_img)
        self._error = self._validate_array(error, 'error')
        self._mask = self._validate_array(mask, 'mask')
        self._background = self._validate_array(background, 'background')
        self.wcs = wcs
        self.localbkg_width = self._validate_localbkg_width(localbkg_width)
        self.apermask_method = self._validate_apermask_method(apermask_method)
        self.kron_params = self._validate_kron_params(kron_params)
        self.progress_bar = progress_bar

        # needed for ordering and isscalar
        # NOTE: calculate slices before labels for performance.
        #       _labels is initially always a non-scalar array, but
        #       it can become a numpy scalar after indexing/slicing.
        self._slices = self._segment_img.slices
        self._labels = self._segment_img.labels

        if self._labels.shape == (0,):
            raise ValueError('segment_img must have at least one non-zero '
                             'label.')

        self._detection_cat = self._validate_detection_cat(detection_cat)
        attrs = ('wcs', 'apermask_method', 'kron_params')
        if self._detection_cat is not None:
            for attr in attrs:
                setattr(self, attr, getattr(self._detection_cat, attr))

        if convolved_data is None:
            self._convolved_data = self._data

        self._apermask_kwargs = {
            'circ': {'method': 'exact'},
            'kron': {'method': 'exact'},
            'fluxfrac': {'method': 'exact'},
            'cen_win': {'method': 'center'}
        }

        self.default_columns = DEFAULT_COLUMNS
        self._extra_properties = []
        self.meta = _get_meta()
        self._update_meta()

    def _validate_segment_img(self, segment_img):
        if not isinstance(segment_img, SegmentationImage):
            raise TypeError('segment_img must be a SegmentationImage')
        if segment_img.shape != self._data.shape:
            raise ValueError('segment_img and data must have the same shape.')
        return segment_img

    def _validate_array(self, array, name, shape=True):
        if name == 'mask' and array is np.ma.nomask:
            array = None
        if array is not None:
            # UFuncTypeError is raised when subtracting float
            # local_background from int data; convert to float
            array = np.asanyarray(array)
            if array.ndim != 2:
                raise ValueError(f'{name} must be a 2D array.')
            if shape and array.shape != self._data.shape:
                raise ValueError(f'data and {name} must have the same shape.')
        return array

    @staticmethod
    def _validate_localbkg_width(localbkg_width):
        if localbkg_width < 0:
            raise ValueError('localbkg_width must be >= 0')
        localbkg_width_int = int(localbkg_width)
        if localbkg_width_int != localbkg_width:
            raise ValueError('localbkg_width must be an integer')
        return localbkg_width_int

    @staticmethod
    def _validate_apermask_method(apermask_method):
        if apermask_method not in ('none', 'mask', 'correct'):
            raise ValueError('Invalid apermask_method value')
        return apermask_method

    @staticmethod
    def _validate_kron_params(kron_params):
        if np.ndim(kron_params) != 1:
            raise ValueError('kron_params must by 1D')
        nparams = len(kron_params)
        if nparams not in (2, 3):
            raise ValueError('kron_params must have 2 or 3 elements')
        if kron_params[0] <= 0:
            raise ValueError('kron_params[0] must be > 0')
        if kron_params[1] <= 0:
            raise ValueError('kron_params[1] must be > 0')
        if nparams == 3 and kron_params[2] < 0:
            raise ValueError('kron_params[2] must be >= 0')
        return tuple(kron_params)

    def _validate_detection_cat(self, detection_cat):
        if detection_cat is None:
            return None

        if not isinstance(detection_cat, SourceCatalog):
            raise TypeError('detection_cat must be a SourceCatalog '
                            'instance')
        if not np.array_equal(detection_cat._segment_img, self._segment_img):
            raise ValueError('detection_cat must have same segment_img as '
                             'the input segment_img')
        return detection_cat

    def _update_meta(self):
        attrs = ('localbkg_width', 'apermask_method', 'kron_params')
        for attr in attrs:
            self.meta[attr] = getattr(self, attr)

    def _set_semode(self):
        # SE emulation
        self._apermask_kwargs = {
            'circ': {'method': 'subpixel', 'subpixels': 5},
            'kron': {'method': 'center'},
            'fluxfrac': {'method': 'subpixel', 'subpixels': 5},
            'cen_win': {'method': 'subpixel', 'subpixels': 11}
        }

    @property
    def _properties(self):
        """
        A list of all class properties, include lazyproperties (even in
        superclasses).
        """
        def isproperty(obj):
            return isinstance(obj, property)

        return [i[0] for i in inspect.getmembers(self.__class__,
                                                 predicate=isproperty)]

    @property
    def properties(self):
        """
        A list of built-in source properties.
        """
        lazyproperties = [name for name in self._lazyproperties if not
                          name.startswith('_')]
        lazyproperties.remove('isscalar')
        lazyproperties.remove('nlabels')
        lazyproperties.extend(['label', 'labels', 'slices'])
        lazyproperties.sort()
        return lazyproperties

    @property
    def _lazyproperties(self):
        """
        A list of all class lazyproperties (even in superclasses).
        """

        def islazyproperty(obj):
            return isinstance(obj, lazyproperty)

        return [i[0] for i in inspect.getmembers(self.__class__,
                                                 predicate=islazyproperty)]

    def __getitem__(self, index):
        if self.isscalar:
            raise TypeError(f'A scalar {self.__class__.__name__!r} object '
                            'cannot be indexed')

        newcls = object.__new__(self.__class__)

        # attributes defined in __init__ that are copied directly to the
        # new class
        init_attr = ('_data', '_segment_img', '_error', '_mask', '_background',
                     'wcs', '_data_unit', '_convolved_data', 'localbkg_width',
                     'apermask_method', 'kron_params', 'default_columns',
                     '_extra_properties', 'meta', '_apermask_kwargs',
                     'progress_bar')
        for attr in init_attr:
            setattr(newcls, attr, getattr(self, attr))

        # _labels determines ordering and isscalar
        attr = '_labels'
        setattr(newcls, attr, getattr(self, attr)[index])

        # need to slice detection_cat, if input
        attr = '_detection_cat'
        if getattr(self, attr) is None:
            setattr(newcls, attr, None)
        else:
            setattr(newcls, attr, getattr(self, attr)[index])

        attr = '_slices'
        # Use a numpy object array to allow for fancy and bool indices.
        # NOTE: None is appended to the list (and then removed) to keep
        # the array only on the outer level (i.e., prevents recursion).
        # Otherwise, the tuple of (y, x) slices are not preserved.
        value = np.array(getattr(self, attr) + [None],
                         dtype=object)[:-1][index]
        if not newcls.isscalar:
            value = value.tolist()
        setattr(newcls, attr, value)

        # evaluated lazyproperty objects and extra properties
        keys = (set(self.__dict__.keys())
                & (set(self._lazyproperties) | set(self._extra_properties)))
        for key in keys:
            value = self.__dict__[key]

            # do not insert attributes that are always scalar (e.g.,
            # isscalar, nlabels), i.e., not an array/list for each
            # source
            if np.isscalar(value):
                continue

            try:
                # keep _<attr> lazyproperties as length-1 iterables;
                # _<attr> lazyproperties should not have @as_scalar applied
                if newcls.isscalar and key.startswith('_'):
                    if isinstance(value, np.ndarray):
                        val = value[:, np.newaxis][index]
                    else:
                        val = [value[index]]
                else:
                    val = value[index]
            except TypeError:
                # apply fancy indices (e.g., array/list or bool
                # mask) to lists
                val = (np.array(value + [None],
                                dtype=object)[:-1][index]).tolist()

            newcls.__dict__[key] = val
        return newcls

    def __str__(self):
        cls_name = f'<{self.__class__.__module__}.{self.__class__.__name__}>'
        with np.printoptions(threshold=25, edgeitems=5):
            fmt = [f'Length: {self.nlabels}', f'labels: {self.labels}']
        return f'{cls_name}\n' + '\n'.join(fmt)

    def __repr__(self):
        return self.__str__()

    def __len__(self):
        if self.isscalar:
            raise TypeError(f'Scalar {self.__class__.__name__!r} object has '
                            'no len()')
        return self.nlabels

    def __iter__(self):
        for item in range(len(self)):
            yield self.__getitem__(item)

    @lazyproperty
    def isscalar(self):
        """
        Whether the instance is scalar (e.g., a single source).
        """
        return self._labels.shape == ()

    @staticmethod
    def _has_len(value):
        if isinstance(value, str):
            return False
        try:
            # NOTE: cannot just check for __len__ attribute, because
            # it could exist, but raise an Exception for scalar objects
            len(value)
        except TypeError:
            return False
        return True

    def copy(self):
        """
        Return a deep copy of this SourceCatalog.
        """
        return deepcopy(self)

    @property
    def extra_properties(self):
        """
        A list of the user-defined source properties.
        """
        return self._extra_properties

    def add_extra_property(self, name, value, overwrite=False):
        """
        Add a user-defined extra property as a new attribute.

        For example, the property ``name`` can then be included in the
        `to_table` ``columns`` keyword list to output the results in the
        table.

        The complete list of user-defined extra properties is stored in
        the `extra_properties` attribute.

        Parameters
        ----------
        name : str
            The name of property. The name must not conflict with any of
            the built-in property names or attributes.

        value : array_like or float
            The value to assign.

        overwrite : bool, option
            If `True`, will overwrite the existing property ``name``.
        """
        internal_attributes = ((set(self.__dict__.keys())
                               | set(self._properties))
                               - set(self.extra_properties))
        if name in internal_attributes:
            raise ValueError(f'{name} cannot be set because it is a '
                             'built-in attribute')

        if not overwrite:
            if hasattr(self, name):
                raise ValueError(f'{name} already exists as an attribute. '
                                 'Set overwrite=True to overwrite an existing '
                                 'attribute.')
            if name in self._extra_properties:
                raise ValueError(f'{name} already exists in the '
                                 '"extra_properties" attribute list.')

        property_error = False
        if self.isscalar:
            # this allows fluxfrac_radius to add len-1 array values for
            # scalar self
            if self._has_len(value) and len(value) == 1:
                value = value[0]

            if hasattr(value, 'isscalar'):
                # e.g., Quantity, SkyCoord, Time
                if not value.isscalar:
                    property_error = True
            else:
                if not np.isscalar(value):
                    property_error = True
        else:
            if not self._has_len(value) or len(value) != self.nlabels:
                property_error = True
        if property_error:
            raise ValueError('value must have the same number of elements as '
                             'the catalog in order to add it as an extra '
                             'property.')

        setattr(self, name, value)
        if not overwrite:
            self._extra_properties.append(name)

    def remove_extra_property(self, name):
        """
        Remove a user-defined extra property.

        The property must have been defined using `add_extra_property`.
        The complete list of user-defined extra properties is stored in
        the `extra_properties` attribute.

        Parameters
        ----------
        name : str
            The name of the property to remove.
        """
        self.remove_extra_properties(name)

    def remove_extra_properties(self, names):
        """
        Remove user-defined extra properties.

        The properties must have been defined using
        `add_extra_property`. The complete list of user-defined extra
        properties is stored in the `extra_properties` attribute.

        Parameters
        ----------
        name : list of str
            The names of the properties to remove.
        """
        names = np.atleast_1d(names)
        for name in names:
            if name in self._extra_properties:
                delattr(self, name)
                self._extra_properties.remove(name)
            else:
                raise ValueError(f'{name} is not a defined extra property.')

    def rename_extra_property(self, name, new_name):
        """
        Rename a user-defined extra property.

        The renamed property will remain at the same index in the
        `extra_properties` list.

        Parameters
        ----------
        name : str
            The old attribute name.

        new_name : str
            The new attribute name.
        """
        self.add_extra_property(new_name, getattr(self, name))
        idx = self.extra_properties.index(name)
        self.remove_extra_property(name)
        # preserve the order of self.extra_properties
        self.extra_properties.remove(new_name)
        self.extra_properties.insert(idx, new_name)

    @lazyproperty
    def _null_objects(self):
        """
        Return `None` values.

        For example, this is used for SkyCoord properties if ``wcs`` is
        `None`.
        """
        return np.array([None] * self.nlabels)

    @lazyproperty
    def _null_values(self):
        """
        Return np.nan values.

        For example, this is used for background properties if
        ``background`` is `None`.
        """
        values = np.empty(self.nlabels)
        values.fill(np.nan)
        return values

    @lazyproperty
    def _data_cutouts(self):
        """
        A list of data cutouts using the segmentation image slices.
        """
        return [self._data[slc] for slc in self._slices_iter]

    @lazyproperty
    def _segment_img_cutouts(self):
        """
        A list of segmentation image cutouts using the segmentation image
        slices.
        """
        return [self._segment_img.data[slc] for slc in self._slices_iter]

    @lazyproperty
    def _mask_cutouts(self):
        """
        A list of mask cutouts using the segmentation image slices.

        If the input ``mask`` is None then a list of None is returned.
        """
        if self._mask is None:
            return self._null_objects
        return [self._mask[slc] for slc in self._slices_iter]

    @lazyproperty
    def _error_cutouts(self):
        """
        A list of error cutouts using the segmentation image slices.

        If the input ``mask`` is None then a list of None is returned.
        """
        if self._error is None:
            return self._null_objects
        return [self._error[slc] for slc in self._slices_iter]

    @lazyproperty
    def _convdata_cutouts(self):
        """
        A list of convolved data cutouts using the segmentation image
        slices.
        """
        return [self._convolved_data[slc] for slc in self._slices_iter]

    @lazyproperty
    def _background_cutouts(self):
        """
        A list of background cutouts using the segmentation image
        slices.
        """
        if self._background is None:
            return self._null_objects
        return [self._background[slc] for slc in self._slices_iter]

    @staticmethod
    def _make_cutout_data_mask(data_cutout, mask_cutout):
        """
        Make a cutout data mask, combining both the input ``mask`` and
        non-finite ``data`` values.
        """
        data_mask = ~np.isfinite(data_cutout)
        if mask_cutout is not None:
            data_mask |= mask_cutout
        return data_mask

    def _make_cutout_data_masks(self, data_cutouts, mask_cutouts):
        """
        Make a list of cutout data masks, combining both the input
        ``mask`` and non-finite ``data`` values for each source.
        """
        data_masks = []
        for (data_cutout, mask_cutout) in zip(data_cutouts, mask_cutouts):
            data_masks.append(self._make_cutout_data_mask(data_cutout,
                                                          mask_cutout))
        return data_masks

    @lazyproperty
    def _cutout_segment_masks(self):
        """
        Cutout boolean mask for source segment.

        The mask is `True` for all pixels (background and from other
        source segments) outside of the source segment.
        """
        return [segm != label
                for label, segm in zip(self.labels,
                                       self._segment_img_cutouts)]

    @lazyproperty
    def _cutout_data_masks(self):
        """
        Cutout boolean mask of non-finite ``data`` values combined with
        the input ``mask`` array.

        The mask is `True` for non-finite ``data`` values and where the
        input ``mask`` is `True`.
        """
        return self._make_cutout_data_masks(self._data_cutouts,
                                            self._mask_cutouts)

    @lazyproperty
    def _cutout_total_masks(self):
        """
        Boolean mask representing the combination of
        ``_cutout_segment_masks`` and ``_cutout_data_masks``.

        This mask is applied to ``data``, ``error``, and ``background``
        inputs when calculating properties.
        """
        masks = []
        for mask1, mask2 in zip(self._cutout_segment_masks,
                                self._cutout_data_masks):
            masks.append(mask1 | mask2)
        return masks

    @lazyproperty
    def _moment_data_cutouts(self):
        """
        A list of 2D `~numpy.ndarray` cutouts from the (convolved) data
        The following pixels are set to zero in these arrays:

            * pixels outside of the source segment
            * any masked pixels from the input ``mask``
            * invalid convolved data values (NaN and inf)
            * negative convolved data values; negative pixels
              (especially at large radii) can give image moments that have
              negative variances.

        These arrays are used to derive moment-based properties.
        """
        cutouts = []
        for convdata_cutout, mask_cutout, segmmask_cutout in zip(
                self._convdata_cutouts, self._mask_cutouts,
                self._cutout_segment_masks):

            convdata_mask = (~np.isfinite(convdata_cutout)
                             | (convdata_cutout < 0) | segmmask_cutout)

            if self._mask is not None:
                convdata_mask |= mask_cutout

            cutout = convdata_cutout.copy()
            cutout[convdata_mask] = 0.0
            cutouts.append(cutout)
        return cutouts

    def _prepare_cutouts(self, arrays, units=True, masked=False, dtype=None):
        """
        Prepare cutouts by applying optional units, masks, or dtype.
        """
        if units and masked:
            raise ValueError('Both units and masked cannot be True')

        if dtype is not None:
            cutouts = []
            for cutout in arrays:
                cutouts.append(cutout.astype(dtype, copy=True))
        else:
            cutouts = arrays

        if units and self._data_unit is not None:
            cutouts = [(cutout << self._data_unit) for cutout in cutouts]
        if masked:
            return [np.ma.masked_array(cutout, mask=mask)
                    for cutout, mask in zip(cutouts, self._cutout_total_masks)]

        return cutouts

    def get_label(self, label):
        """
        Return a new `SourceCatalog` object for the input ``label``
        only.

        Parameters
        ----------
        label : int
            The source label.

        Returns
        -------
        cat : `SourceCatalog`
            A new `SourceCatalog` object containing only the source with
            the input ``label``.
        """
        return self.get_labels(label)

    def get_labels(self, labels):
        """
        Return a new `SourceCatalog` object for the input ``labels``
        only.

        Parameters
        ----------
        labels : list, tuple, or `~numpy.ndarray` of int
            The source label(s).

        Returns
        -------
        cat : `SourceCatalog`
            A new `SourceCatalog` object containing only the sources with
            the input ``labels``.
        """
        sorter = np.argsort(self.labels)
        indices = sorter[np.searchsorted(self.labels, labels, sorter=sorter)]
        return self[indices]

    def to_table(self, columns=None):
        """
        Create a `~astropy.table.QTable` of source properties.

        Parameters
        ----------
        columns : str, list of str, `None`, optional
            Names of columns, in order, to include in the output
            `~astropy.table.QTable`. The allowed column names are any of
            the `SourceCatalog` properties or custom properties added
            using `add_extra_property`. If ``columns`` is `None`, then a
            default list of scalar-valued properties (as defined by the
            ``default_columns`` attribute) will be used.

        Returns
        -------
        table : `~astropy.table.QTable`
            A table of sources properties with one row per source.
        """
        if columns is None:
            table_columns = self.default_columns
        else:
            table_columns = np.atleast_1d(columns)

        tbl = QTable()
        tbl.meta.update(self.meta)  # keep tbl.meta type
        for column in table_columns:
            values = getattr(self, column)

            # column assignment requires an object with a length
            if self.isscalar:
                values = (values,)

            tbl[column] = values
        return tbl

    @lazyproperty
    def nlabels(self):
        """
        The number of source labels.
        """
        return len(self.labels)

    @property
    @as_scalar
    def label(self):
        """
        The source label number(s).

        This label number corresponds to the assigned pixel value in the
        `~photutils.segmentation.SegmentationImage`.
        """
        return self._labels

    @property
    def labels(self):
        """
        The source label number(s), always as an iterable
        `~numpy.ndarray`.

        This label number corresponds to the assigned pixel value in the
        `~photutils.segmentation.SegmentationImage`.
        """
        labels = self.label
        if self.isscalar:
            labels = np.array((labels,))
        return labels

    @property
    @as_scalar
    def slices(self):
        """
        A tuple of slice objects defining the minimal bounding box of
        the source.
        """
        return self._slices

    @lazyproperty
    def _slices_iter(self):
        """
        A tuple of slice objects defining the minimal bounding box of
        the source, always as an iterable.
        """
        _slices = self.slices
        if self.isscalar:
            _slices = (_slices,)
        return _slices

    @lazyproperty
    @as_scalar
    def segment(self):
        """
        A 2D `~numpy.ndarray` cutout of the segmentation image using the
        minimal bounding box of the source.
        """
        return self._prepare_cutouts(self._segment_img_cutouts, units=False,
                                     masked=False)

    @lazyproperty
    @as_scalar
    def segment_ma(self):
        """
        A 2D `~numpy.ma.MaskedArray` cutout of the segmentation image
        using the minimal bounding box of the source.

        The mask is `True` for pixels outside of the source segment
        (labeled region of interest), masked pixels from the ``mask``
        input, or any non-finite ``data`` values (NaN and inf).
        """
        return self._prepare_cutouts(self._segment_img_cutouts, units=False,
                                     masked=True)

    @lazyproperty
    @as_scalar
    def data(self):
        """
        A 2D `~numpy.ndarray` cutout from the data using the minimal
        bounding box of the source.
        """
        return self._prepare_cutouts(self._data_cutouts, units=True,
                                     masked=False, dtype=float)

    @lazyproperty
    @as_scalar
    def data_ma(self):
        """
        A 2D `~numpy.ma.MaskedArray` cutout from the data using the
        minimal bounding box of the source.

        The mask is `True` for pixels outside of the source segment
        (labeled region of interest), masked pixels from the ``mask``
        input, or any non-finite ``data`` values (NaN and inf).
        """
        return self._prepare_cutouts(self._data_cutouts, units=False,
                                     masked=True, dtype=float)

    @lazyproperty
    @as_scalar
    def convdata(self):
        """
        A 2D `~numpy.ndarray` cutout from the convolved data using the
        minimal bounding box of the source.
        """
        return self._prepare_cutouts(self._convdata_cutouts, units=True,
                                     masked=False, dtype=float)

    @lazyproperty
    @as_scalar
    def convdata_ma(self):
        """
        A 2D `~numpy.ma.MaskedArray` cutout from the convolved data
        using the minimal bounding box of the source.

        The mask is `True` for pixels outside of the source segment
        (labeled region of interest), masked pixels from the ``mask``
        input, or any non-finite ``data`` values (NaN and inf).
        """
        return self._prepare_cutouts(self._convdata_cutouts, units=False,
                                     masked=True, dtype=float)

    @lazyproperty
    @as_scalar
    def error(self):
        """
        A 2D `~numpy.ndarray` cutout from the error array using the
        minimal bounding box of the source.
        """
        if self._error is None:
            return self._null_objects
        return self._prepare_cutouts(self._error_cutouts, units=True,
                                     masked=False)

    @lazyproperty
    @as_scalar
    def error_ma(self):
        """
        A 2D `~numpy.ma.MaskedArray` cutout from the error array using
        the minimal bounding box of the source.

        The mask is `True` for pixels outside of the source segment
        (labeled region of interest), masked pixels from the ``mask``
        input, or any non-finite ``data`` values (NaN and inf).
        """
        if self._error is None:
            return self._null_objects
        return self._prepare_cutouts(self._error_cutouts, units=False,
                                     masked=True)

    @lazyproperty
    @as_scalar
    def background(self):
        """
        A 2D `~numpy.ndarray` cutout from the background array using the
        minimal bounding box of the source.
        """
        if self._background is None:
            return self._null_objects
        return self._prepare_cutouts(self._background_cutouts, units=True,
                                     masked=False)

    @lazyproperty
    @as_scalar
    def background_ma(self):
        """
        A 2D `~numpy.ma.MaskedArray` cutout from the background array.
        using the minimal bounding box of the source.

        The mask is `True` for pixels outside of the source segment
        (labeled region of interest), masked pixels from the ``mask``
        input, or any non-finite ``data`` values (NaN and inf).
        """
        if self._background is None:
            return self._null_objects
        return self._prepare_cutouts(self._background_cutouts, units=False,
                                     masked=True)

    @lazyproperty
    def _all_masked(self):
        """
        True if all pixels over the source segment are masked.
        """
        return np.array([np.all(mask) for mask in self._cutout_total_masks])

    def _get_values(self, array):
        """
        Get a 1D array of unmasked values from the input array within
        the source segment.

        An array with a single NaN is returned for completely-masked
        sources.
        """
        if self.isscalar:
            array = (array,)
        return [arr.compressed() if len(arr.compressed()) > 0
                else np.array([np.nan]) for arr in array]

    @lazyproperty
    def _data_values(self):
        """
        A 1D array of unmasked data values.

        An array with a single NaN is returned for completely-masked
        sources.
        """
        return self._get_values(self.data_ma)

    @lazyproperty
    def _error_values(self):
        """
        A 1D array of unmasked error values.

        An array with a single NaN is returned for completely-masked
        sources.
        """
        return self._get_values(self.error_ma)

    @lazyproperty
    def _background_values(self):
        """
        A 1D array of unmasked background values.

        An array with a single NaN is returned for completely-masked
        sources.
        """
        return self._get_values(self.background_ma)

    @lazyproperty
    @use_detcat
    @as_scalar
    def moments(self):
        """
        Spatial moments up to 3rd order of the source.
        """
        return np.array([_moments(arr, order=3) for arr in
                         self._moment_data_cutouts])

    @lazyproperty
    @use_detcat
    @as_scalar
    def moments_central(self):
        """
        Central moments (translation invariant) of the source up to 3rd
        order.
        """
        cutout_centroid = self.cutout_centroid
        if self.isscalar:
            cutout_centroid = cutout_centroid[np.newaxis, :]
        return np.array([_moments_central(arr, center=(xcen_, ycen_), order=3)
                         for arr, xcen_, ycen_ in
                         zip(self._moment_data_cutouts, cutout_centroid[:, 0],
                             cutout_centroid[:, 1])])

    @lazyproperty
    @use_detcat
    @as_scalar
    def cutout_centroid(self):
        """
        The ``(x, y)`` coordinate, relative to the cutout data, of
        the centroid within the isophotal source segment.

        The centroid is computed as the center of mass of the unmasked
        pixels within the source segment.
        """
        moments = self.moments
        if self.isscalar:
            moments = moments[np.newaxis, :]

        # ignore divide-by-zero RuntimeWarning
        with warnings.catch_warnings():
            warnings.simplefilter('ignore', RuntimeWarning)
            ycentroid = moments[:, 1, 0] / moments[:, 0, 0]
            xcentroid = moments[:, 0, 1] / moments[:, 0, 0]
        return np.transpose((xcentroid, ycentroid))

    @lazyproperty
    @use_detcat
    @as_scalar
    def centroid(self):
        """
        The ``(x, y)`` coordinate of the centroid within the isophotal
        source segment.

        The centroid is computed as the center of mass of the unmasked
        pixels within the source segment.
        """
        origin = np.transpose((self.bbox_xmin, self.bbox_ymin))
        return self.cutout_centroid + origin

    @lazyproperty
    @use_detcat
    def _xcentroid(self):
        """
        The ``x`` coordinate of the `centroid` within the source
        segment, always as an iterable.
        """
        if self.isscalar:
            xcentroid = self.centroid[0:1]  # scalar array
        else:
            xcentroid = self.centroid[:, 0]
        return xcentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def xcentroid(self):
        """
        The ``x`` coordinate of the `centroid` within the source
        segment.

        The centroid is computed as the center of mass of the unmasked
        pixels within the source segment.
        """
        return self._xcentroid

    @lazyproperty
    @use_detcat
    def _ycentroid(self):
        """
        The ``y`` coordinate of the `centroid` within the source
        segment, always as an iterable.
        """
        if self.isscalar:
            ycentroid = self.centroid[1:2]  # scalar array
        else:
            ycentroid = self.centroid[:, 1]
        return ycentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def ycentroid(self):
        """
        The ``y`` coordinate of the `centroid` within the source
        segment.

        The centroid is computed as the center of mass of the unmasked
        pixels within the source segment.
        """
        return self._ycentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def centroid_win(self):
        """
        The ``(x, y)`` coordinate of the "windowed" centroid.

        The window centroid is computed using an iterative algorithm
        to derive a more accurate centroid. It is equivalent to
        `SourceExtractor`_'s XWIN_IMAGE and YWIN_IMAGE parameters.

        Notes
        -----
        On each iteration, the centroid is calculated using all pixels
        within a circular aperture of ``4 * sigma`` from the current
        position, weighting pixel values with a 2D Gaussian with a
        standard deviation of ``sigma``. ``sigma`` is the half-light
        radius (i.e., ``flucfrac_radius(0.5)``) times (2.0 / 2.35). A
        minimum half-light radius of 0.5 pixels is used. Iteration stops
        when the change in centroid position falls below a pre-defined
        threshold or a maximum number of iterations is reached.

        If the windowed centroid falls outside of the 1-sigma ellipse
        shape based on the image moments, then the isophotal `centroid`
        will be used instead.
        """
        radius_hl = self.fluxfrac_radius(0.5).value
        if self.isscalar:
            radius_hl = np.array([radius_hl])
        min_radius = 0.5  # define minimum half-light radius
        mask = (radius_hl < min_radius) | ~np.isfinite(radius_hl)
        radius_hl[mask] = min_radius
        kwargs = self._apermask_kwargs['cen_win']

        labels = self.labels
        if self.progress_bar:
            desc = 'centroid_win'
            labels = add_progress_bar(labels, desc=desc)  # pragma: no cover

        xcen_win = []
        ycen_win = []
        for label, xcen, ycen, rad_hl in zip(labels, self._xcentroid,
                                             self._ycentroid, radius_hl):

            if np.any(~np.isfinite((xcen, ycen))):
                xcen_win.append(np.nan)
                ycen_win.append(np.nan)
                continue

            sigma = 2.0 * rad_hl * gaussian_fwhm_to_sigma
            sigma2 = sigma**2
            radius = 4.0 * sigma

            iter_ = 0
            dcen = 1
            max_iters = 16
            centroid_threshold = 0.0001
            while iter_ < max_iters and dcen > centroid_threshold:
                aperture = CircularAperture((xcen, ycen), radius)
                aperture_mask = aperture.to_mask(**kwargs)

                # for consistency with the isophotal centroid, a local
                # background is not subtracted here
                data, _, mask, cutout_xycen, slc_sm = self._make_aperture_data(
                    label, xcen, ycen, aperture_mask.bbox, 0.0,
                    make_error=False)

                if data is None:
                    # return NaN if centroid moves the aperture
                    # completely off the image
                    xcen = np.nan
                    ycen = np.nan
                    break

                aperture_weights = aperture_mask.data[slc_sm]

                # define a 2D Gaussian weight array
                xvals = np.arange(data.shape[1]) - cutout_xycen[0]
                yvals = np.arange(data.shape[0]) - cutout_xycen[1]
                xx, yy = np.meshgrid(xvals, yvals)
                rr2 = xx**2 + yy**2
                gweight = np.exp(-rr2 / (2.0 * sigma2))

                # ignore multiplication with non-finite values
                # and ignore divide-by-zero if moments[0, 0] = 0
                with warnings.catch_warnings():
                    warnings.simplefilter('ignore', RuntimeWarning)
                    data = data * aperture_weights * gweight
                    data[mask] = 0.0

                    moments = _moments_central(data, center=cutout_xycen,
                                               order=1)
                    dy = moments[1, 0] / moments[0, 0]
                    dx = moments[0, 1] / moments[0, 0]
                    dcen = np.sqrt(dx**2 + dy**2)
                    xcen += dx * 2.0
                    ycen += dy * 2.0
                    iter_ += 1

            xcen_win.append(xcen)
            ycen_win.append(ycen)

        xcen_win = np.array(xcen_win)
        ycen_win = np.array(ycen_win)

        # reset to the isophotal centroid if the windowed centroid is
        # outside of the 1-sigma ellipse
        dx = self._xcentroid - xcen_win
        dy = self._ycentroid - ycen_win
        cxx = self.cxx.value
        cxy = self.cxy.value
        cyy = self.cyy.value
        if self.isscalar:
            cxx = (cxx,)
            cxy = (cxy,)
            cyy = (cyy,)
        mask = ((cxx * dx**2 + cxy * dx * dy + cyy * dy**2) > 1)
        mask |= (np.isnan(xcen_win) | np.isnan(ycen_win))
        if np.any(mask):
            xcen_win[mask] = self._xcentroid[mask]
            ycen_win[mask] = self._ycentroid[mask]

        return np.transpose((xcen_win, ycen_win))

    @lazyproperty
    @use_detcat
    @as_scalar
    def xcentroid_win(self):
        """
        The ``x`` coordinate of the "windowed" centroid
        (`centroid_win`).

        The window centroid is computed using an iterative algorithm
        to derive a more accurate centroid. It is equivalent to
        `SourceExtractor`_'s XWIN_IMAGE parameters.
        """
        if self.isscalar:
            xcentroid = self.centroid_win[0]  # scalar array
        else:
            xcentroid = self.centroid_win[:, 0]
        return xcentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def ycentroid_win(self):
        """
        The ``y`` coordinate of the "windowed" centroid
        (`centroid_win`).

        The window centroid is computed using an iterative algorithm
        to derive a more accurate centroid. It is equivalent to
        `SourceExtractor`_'s YWIN_IMAGE parameters.
        """
        if self.isscalar:
            ycentroid = self.centroid_win[1]  # scalar array
        else:
            ycentroid = self.centroid_win[:, 1]
        return ycentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def cutout_centroid_win(self):
        """
        The ``(x, y)`` coordinate, relative to the cutout data, of the
        "windowed" centroid.

        The window centroid is computed using an iterative algorithm
        to derive a more accurate centroid. It is equivalent to
        `SourceExtractor`_'s XWIN_IMAGE and YWIN_IMAGE parameters. See
        `centroid_win` for further details about the algorithm.
        """
        origin = np.transpose((self.bbox_xmin, self.bbox_ymin))
        return self.centroid_win - origin

    @lazyproperty
    @use_detcat
    @as_scalar
    def cutout_centroid_quad(self):
        """
        The ``(x, y)`` centroid coordinate, relative to the cutout data,
        calculated by fitting a 2D quadratic polynomial to the unmasked
        pixels in the source segment.

        Notes
        -----
        `~photutils.centroids.centroid_quadratic` is used to calculate
        the centroid with ``fit_boxsize=3``.

        Because this centroid is based on fitting data, it can fail for
        many reasons including:

            * quadratic fit failed
            * quadratic fit does not have a maximum
            * quadratic fit maximum falls outside image
            * not enough unmasked data points (6 are required)

        In these cases, then the isophotal `centroid` will be used
        instead.

        Also note that a fit is not performed if the maximum data value
        is at the edge of the source segment. In this case, the position
        of the maximum pixel will be returned.
        """
        centroid_quad = []
        with warnings.catch_warnings():
            # ignore fit warnings:
            #   - quadratic fit failed
            #   - quadratic fit does not have a maximum
            #   - quadratic fit maximum falls outside image
            #   - not enough unmasked data points (6 are required)
            #   - maximum value is at the edge of the data
            warnings.simplefilter('ignore', AstropyUserWarning)

            cutouts = self._data_cutouts
            if self.progress_bar:
                desc = 'centroid_quad'
                cutouts = add_progress_bar(cutouts, desc=desc)  # pragma: no cover

            for data, mask in zip(cutouts, self._cutout_total_masks):
                try:
                    centroid = centroid_quadratic(data, mask=mask,
                                                  fit_boxsize=3)
                except ValueError:
                    centroid = (np.nan, np.nan)
                centroid_quad.append(centroid)

        centroid_quad = np.array(centroid_quad)

        # use the segment barycenter if fit returned NaN
        nan_mask = (np.isnan(centroid_quad[:, 0])
                    | np.isnan(centroid_quad[:, 1]))
        if np.any(nan_mask):
            centroid_quad[nan_mask] = self.cutout_centroid[nan_mask]

        return centroid_quad

    @lazyproperty
    @use_detcat
    @as_scalar
    def centroid_quad(self):
        """
        The ``(x, y)`` centroid coordinate, calculated by fitting a 2D
        quadratic polynomial to the unmasked pixels in the source
        segment.

        Notes
        -----
        `~photutils.centroids.centroid_quadratic` is used to calculate
        the centroid with ``fit_boxsize=3``.

        Because this centroid is based on fitting data, it can fail for
        many reasons, returning (np.nan, np.nan):

            * quadratic fit failed
            * quadratic fit does not have a maximum
            * quadratic fit maximum falls outside image
            * not enough unmasked data points (6 are required)

        Also note that a fit is not performed if the maximum data value
        is at the edge of the source segment. In this case, the position
        of the maximum pixel will be returned.
        """
        origin = np.transpose((self.bbox_xmin, self.bbox_ymin))
        return self.cutout_centroid_quad + origin

    @lazyproperty
    @use_detcat
    @as_scalar
    def xcentroid_quad(self):
        """
        The ``x`` coordinate of the centroid (`centroid_quad`),
        calculated by fitting a 2D quadratic polynomial to the unmasked
        pixels in the source segment.
        """
        if self.isscalar:
            xcentroid = self.centroid_quad[0]  # scalar array
        else:
            xcentroid = self.centroid_quad[:, 0]
        return xcentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def ycentroid_quad(self):
        """
        The ``y`` coordinate of the centroid (`centroid_quad`),
        calculated by fitting a 2D quadratic polynomial to the unmasked
        pixels in the source segment.
        """
        if self.isscalar:
            ycentroid = self.centroid_quad[1]  # scalar array
        else:
            ycentroid = self.centroid_quad[:, 1]
        return ycentroid

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_centroid(self):
        """
        The sky coordinate of the `centroid` within the source segment,
        returned as a `~astropy.coordinates.SkyCoord` object.

        The output coordinate frame is the same as the input ``wcs``.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(self.xcentroid, self.ycentroid)

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_centroid_icrs(self):
        """
        The sky coordinate in the International Celestial Reference
        System (ICRS) frame of the `centroid` within the source segment,
        returned as a `~astropy.coordinates.SkyCoord` object.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.sky_centroid.icrs

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_centroid_win(self):
        """
        The sky coordinate of the "windowed" centroid
        (`centroid_win`) within the source segment, returned as a
        `~astropy.coordinates.SkyCoord` object.

        The output coordinate frame is the same as the input ``wcs``.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(self.xcentroid_win, self.ycentroid_win)

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_centroid_quad(self):
        """
        The sky coordinate of the centroid (`centroid_quad`), calculated
        by fitting a 2D quadratic polynomial to the unmasked pixels in
        the source segment.

        The output coordinate frame is the same as the input ``wcs``.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(self.xcentroid_quad,
                                       self.ycentroid_quad)

    @lazyproperty
    @use_detcat
    def _bbox(self):
        """
        The `~photutils.aperture.BoundingBox` of the minimal rectangular
        region containing the source segment, always as an iterable.
        """
        return [BoundingBox(ixmin=slc[1].start, ixmax=slc[1].stop,
                            iymin=slc[0].start, iymax=slc[0].stop)
                for slc in self._slices_iter]

    @lazyproperty
    @use_detcat
    @as_scalar
    def bbox(self):
        """
        The `~photutils.aperture.BoundingBox` of the minimal rectangular
        region containing the source segment.
        """
        return self._bbox

    @lazyproperty
    @use_detcat
    @as_scalar
    def bbox_xmin(self):
        """
        The minimum ``x`` pixel index within the minimal bounding box
        containing the source segment.
        """
        return np.array([slc[1].start for slc in self._slices_iter])

    @lazyproperty
    @use_detcat
    @as_scalar
    def bbox_xmax(self):
        """
        The maximum ``x`` pixel index within the minimal bounding box
        containing the source segment.

        Note that this value is inclusive, unlike numpy slice indices.
        """
        return np.array([slc[1].stop - 1 for slc in self._slices_iter])

    @lazyproperty
    @use_detcat
    @as_scalar
    def bbox_ymin(self):
        """
        The minimum ``y`` pixel index within the minimal bounding box
        containing the source segment.
        """
        return np.array([slc[0].start for slc in self._slices_iter])

    @lazyproperty
    @use_detcat
    @as_scalar
    def bbox_ymax(self):
        """
        The maximum ``y`` pixel index within the minimal bounding box
        containing the source segment.

        Note that this value is inclusive, unlike numpy slice indices.
        """
        return np.array([slc[0].stop - 1 for slc in self._slices_iter])

    @lazyproperty
    @use_detcat
    def _bbox_corner_ll(self):
        """
        Lower-left *outside* pixel corner location (not index).
        """
        xypos = []
        for bbox_ in self._bbox:
            xypos.append((bbox_.ixmin - 0.5, bbox_.iymin - 0.5))
        return np.array(xypos)

    @lazyproperty
    @use_detcat
    def _bbox_corner_ul(self):
        """
        Upper-left *outside* pixel corner location (not index).
        """
        xypos = []
        for bbox_ in self._bbox:
            xypos.append((bbox_.ixmin - 0.5, bbox_.iymax + 0.5))
        return np.array(xypos)

    @lazyproperty
    @use_detcat
    def _bbox_corner_lr(self):
        """
        Lower-right *outside* pixel corner location (not index).
        """
        xypos = []
        for bbox_ in self._bbox:
            xypos.append((bbox_.ixmax + 0.5, bbox_.iymin - 0.5))
        return np.array(xypos)

    @lazyproperty
    @use_detcat
    def _bbox_corner_ur(self):
        """
        Upper-right *outside* pixel corner location (not index).
        """
        xypos = []
        for bbox_ in self._bbox:
            xypos.append((bbox_.ixmax + 0.5, bbox_.iymax + 0.5))
        return np.array(xypos)

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_bbox_ll(self):
        """
        The sky coordinates of the lower-left corner vertex of the
        minimal bounding box of the source segment, returned as a
        `~astropy.coordinates.SkyCoord` object.

        The bounding box encloses all of the source segment pixels in
        their entirety, thus the vertices are at the pixel *corners*,
        not their centers.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(*np.transpose(self._bbox_corner_ll))

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_bbox_ul(self):
        """
        The sky coordinates of the upper-left corner vertex of the
        minimal bounding box of the source segment, returned as a
        `~astropy.coordinates.SkyCoord` object.

        The bounding box encloses all of the source segment pixels in
        their entirety, thus the vertices are at the pixel *corners*,
        not their centers.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(*np.transpose(self._bbox_corner_ul))

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_bbox_lr(self):
        """
        The sky coordinates of the lower-right corner vertex of the
        minimal bounding box of the source segment, returned as a
        `~astropy.coordinates.SkyCoord` object.

        The bounding box encloses all of the source segment pixels in
        their entirety, thus the vertices are at the pixel *corners*,
        not their centers.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(*np.transpose(self._bbox_corner_lr))

    @lazyproperty
    @use_detcat
    @as_scalar
    def sky_bbox_ur(self):
        """
        The sky coordinates of the upper-right corner vertex of the
        minimal bounding box of the source segment, returned as a
        `~astropy.coordinates.SkyCoord` object.

        The bounding box encloses all of the source segment pixels in
        their entirety, thus the vertices are at the pixel *corners*,
        not their centers.

        `None` if ``wcs`` is not input.
        """
        if self.wcs is None:
            return self._null_objects
        return self.wcs.pixel_to_world(*np.transpose(self._bbox_corner_ur))

    @lazyproperty
    @as_scalar
    def min_value(self):
        """
        The minimum pixel value of the ``data`` within the source
        segment.
        """
        values = np.array([np.min(array) for array in self._data_values])
        values -= self._local_background
        if self._data_unit is not None:
            values <<= self._data_unit
        return values

    @lazyproperty
    @as_scalar
    def max_value(self):
        """
        The maximum pixel value of the ``data`` within the source
        segment.
        """
        values = np.array([np.max(array) for array in self._data_values])
        values -= self._local_background
        if self._data_unit is not None:
            values <<= self._data_unit
        return values

    @lazyproperty
    @as_scalar
    def cutout_minval_index(self):
        """
        The ``(y, x)`` coordinate, relative to the cutout data, of the
        minimum pixel value of the ``data`` within the source segment.

        If there are multiple occurrences of the minimum value, only the
        first occurrence is returned.
        """
        data = self.data_ma
        if self.isscalar:
            data = (data,)
        idx = []
        for arr in data:
            if np.all(arr.mask):
                idx.append((np.nan, np.nan))
            else:
                idx.append(np.unravel_index(np.argmin(arr), arr.shape))
        return np.array(idx)

    @lazyproperty
    @as_scalar
    def cutout_maxval_index(self):
        """
        The ``(y, x)`` coordinate, relative to the cutout data, of the
        maximum pixel value of the ``data`` within the source segment.

        If there are multiple occurrences of the maximum value, only the
        first occurrence is returned.
        """
        data = self.data_ma
        if self.isscalar:
            data = (data,)
        idx = []
        for arr in data:
            if np.all(arr.mask):
                idx.append((np.nan, np.nan))
            else:
                idx.append(np.unravel_index(np.argmax(arr), arr.shape))
        return np.array(idx)

    @lazyproperty
    @as_scalar
    def minval_index(self):
        """
        The ``(y, x)`` coordinate of the minimum pixel value of the
        ``data`` within the source segment.

        If there are multiple occurrences of the minimum value, only the
        first occurrence is returned.
        """
        index = self.cutout_minval_index
        if self.isscalar:
            index = (index,)
        out = []
        for idx, slc in zip(index, self._slices_iter):
            out.append((idx[0] + slc[0].start, idx[1] + slc[1].start))
        return np.array(out)

    @lazyproperty
    @as_scalar
    def maxval_index(self):
        """
        The ``(y, x)`` coordinate of the maximum pixel value of the
        ``data`` within the source segment.

        If there are multiple occurrences of the maximum value, only the
        first occurrence is returned.
        """
        index = self.cutout_maxval_index
        if self.isscalar:
            index = (index,)
        out = []
        for idx, slc in zip(index, self._slices_iter):
            out.append((idx[0] + slc[0].start, idx[1] + slc[1].start))
        return np.array(out)

    @lazyproperty
    @as_scalar
    def minval_xindex(self):
        """
        The ``x`` coordinate of the minimum pixel value of the ``data``
        within the source segment.

        If there are multiple occurrences of the minimum value, only the
        first occurrence is returned.
        """
        if self.isscalar:
            xidx = self.minval_index[1]
        else:
            xidx = self.minval_index[:, 1]
        return xidx

    @lazyproperty
    @as_scalar
    def minval_yindex(self):
        """
        The ``y`` coordinate of the minimum pixel value of the ``data``
        within the source segment.

        If there are multiple occurrences of the minimum value, only the
        first occurrence is returned.
        """
        if self.isscalar:
            yidx = self.minval_index[0]
        else:
            yidx = self.minval_index[:, 0]
        return yidx

    @lazyproperty
    @as_scalar
    def maxval_xindex(self):
        """
        The ``x`` coordinate of the maximum pixel value of the ``data``
        within the source segment.

        If there are multiple occurrences of the maximum value, only the
        first occurrence is returned.
        """
        if self.isscalar:
            xidx = self.maxval_index[1]
        else:
            xidx = self.maxval_index[:, 1]
        return xidx

    @lazyproperty
    @as_scalar
    def maxval_yindex(self):
        """
        The ``y`` coordinate of the maximum pixel value of the ``data``
        within the source segment.

        If there are multiple occurrences of the maximum value, only the
        first occurrence is returned.
        """
        if self.isscalar:
            yidx = self.maxval_index[0]
        else:
            yidx = self.maxval_index[:, 0]
        return yidx

    @lazyproperty
    @as_scalar
    def segment_flux(self):
        r"""
        The sum of the unmasked ``data`` values within the source segment.

        .. math:: F = \sum_{i \in S} I_i

        where :math:`F` is ``segment_flux``, :math:`I_i` is the
        background-subtracted ``data``, and :math:`S` are the unmasked
        pixels in the source segment.

        Non-finite pixel values (NaN and inf) are excluded
        (automatically masked).
        """
        localbkg = self._local_background
        if self.isscalar:
            localbkg = localbkg[0]
        source_sum = np.array([np.sum(arr) for arr in self._data_values])
        source_sum -= self.area.value * localbkg
        if self._data_unit is not None:
            source_sum <<= self._data_unit
        return source_sum

    @lazyproperty
    @as_scalar
    def segment_fluxerr(self):
        r"""
        The uncertainty of `segment_flux` , propagated from the input
        ``error`` array.

        ``segment_fluxerr`` is the quadrature sum of the total errors
        over the unmasked pixels within the source segment:

        .. math:: \Delta F = \sqrt{\sum_{i \in S}
                  \sigma_{\mathrm{tot}, i}^2}

        where :math:`\Delta F` is the `segment_flux`,
        :math:`\sigma_{\mathrm{tot, i}}` are the pixel-wise total
        errors (``error``), and :math:`S` are the unmasked pixels in the
        source segment.

        Pixel values that are masked in the input ``data``, including
        any non-finite pixel values (NaN and inf) that are automatically
        masked, are also masked in the error array.
        """
        if self._error is None:
            err = self._null_values
        else:
            err = np.sqrt(np.array([np.sum(arr**2)
                                    for arr in self._error_values]))

        if self._data_unit is not None:
            err <<= self._data_unit
        return err

    @lazyproperty
    @as_scalar
    def background_sum(self):
        """
        The sum of ``background`` values within the source segment.

        Pixel values that are masked in the input ``data``, including
        any non-finite pixel values (NaN and inf) that are automatically
        masked, are also masked in the background array.
        """
        if self._background is None:
            bkg_sum = self._null_values
        else:
            bkg_sum = np.array([np.sum(arr)
                                for arr in self._background_values])

        if self._data_unit is not None:
            bkg_sum <<= self._data_unit
        return bkg_sum

    @lazyproperty
    @as_scalar
    def background_mean(self):
        """
        The mean of ``background`` values within the source segment.

        Pixel values that are masked in the input ``data``, including
        any non-finite pixel values (NaN and inf) that are automatically
        masked, are also masked in the background array.
        """
        if self._background is None:
            bkg_mean = self._null_values
        else:
            bkg_mean = np.array([np.mean(arr)
                                 for arr in self._background_values])

        if self._data_unit is not None:
            bkg_mean <<= self._data_unit
        return bkg_mean

    @lazyproperty
    @as_scalar
    def background_centroid(self):
        """
        The value of the per-pixel ``background`` at the position of the
        isophotal (center-of-mass) `centroid`.

        If ``detection_cat`` is input, then its `centroid` will be used.

        The background value at fractional position values are
        determined using bilinear interpolation.
        """
        if self._background is None:
            bkg = self._null_values
        else:
            from scipy.ndimage import map_coordinates

            xcen = self._xcentroid
            ycen = self._ycentroid
            bkg = map_coordinates(self._background, (xcen, ycen), order=1,
                                  mode='nearest')

            mask = np.isfinite(xcen) & np.isfinite(ycen)
            bkg[~mask] = np.nan

        if self._data_unit is not None:
            bkg <<= self._data_unit
        return bkg

    @lazyproperty
    @use_detcat
    @as_scalar
    def segment_area(self):
        """
        The total area of the source segment in units of pixels**2.

        This area is simply the area of the source segment from the
        input ``segment_img``. It does not take into account any data
        masking (i.e., a ``mask`` input to `SourceCatalog` or invalid
        ``data`` values).
        """
        areas = []
        for label, slices in zip(self.labels, self._slices_iter):
            areas.append(np.count_nonzero(self._segment_img[slices] == label))
        return np.array(areas) << (u.pix**2)

    @lazyproperty
    @use_detcat
    @as_scalar
    def area(self):
        """
        The total unmasked area of the source in units of pixels**2.

        Note that the source area may be smaller than its `segment_area`
        if a mask is input to `SourceCatalog` or if the ``data`` within
        the segment contains invalid values (NaN and inf).
        """
        areas = np.array([arr.size for arr in self._data_values]).astype(float)
        areas[self._all_masked] = np.nan
        return areas << (u.pix**2)

    @lazyproperty
    @use_detcat
    @as_scalar
    def equivalent_radius(self):
        """
        The radius of a circle with the same `area` as the source
        segment.
        """
        return np.sqrt(self.area / np.pi)

    @lazyproperty
    @use_detcat
    @as_scalar
    def perimeter(self):
        """
        The perimeter of the source segment, approximated as the total
        length of lines connecting the centers of the border pixels
        defined by a 4-pixel connectivity.

        If any masked pixels make holes within the source segment, then
        the perimeter around the inner hole (e.g., an annulus) will also
        contribute to the total perimeter.

        References
        ----------
        .. [1] K. Benkrid, D. Crookes, and A. Benkrid.  "Design and FPGA
               Implementation of a Perimeter Estimator".  Proceedings of
               the Irish Machine Vision and Image Processing Conference,
               pp. 51-57 (2000).
               https://maa.org/sites/default/files/images/upload_library/applets/CirclesRedistrict/perimeter.doc
        """
        from scipy.ndimage import binary_erosion, convolve

        footprint = np.array([[0, 1, 0], [1, 1, 1], [0, 1, 0]])
        kernel = np.array([[10, 2, 10], [2, 1, 2], [10, 2, 10]])
        size = 34
        weights = np.zeros(size, dtype=float)
        weights[[5, 7, 15, 17, 25, 27]] = 1.0
        weights[[21, 33]] = np.sqrt(2.0)
        weights[[13, 23]] = (1 + np.sqrt(2.0)) / 2.0

        perimeter = []
        for mask in self._cutout_total_masks:
            if np.all(mask):
                perimeter.append(np.nan)
                continue

            data = ~mask
            data_eroded = binary_erosion(data, footprint, border_value=0)
            border = np.logical_xor(data, data_eroded).astype(int)
            perimeter_data = convolve(border, kernel, mode='constant', cval=0)
            perimeter_hist = np.bincount(perimeter_data.ravel(),
                                         minlength=size)
            perimeter.append(perimeter_hist[0:size] @ weights)

        return np.array(perimeter) * u.pix

    @lazyproperty
    @use_detcat
    @as_scalar
    def inertia_tensor(self):
        """
        The inertia tensor of the source for the rotation around its
        center of mass.
        """
        moments = self.moments_central
        if self.isscalar:
            moments = moments[np.newaxis, :]
        mu_02 = moments[:, 0, 2]
        mu_11 = -moments[:, 1, 1]
        mu_20 = moments[:, 2, 0]
        tensor = np.array([mu_02, mu_11, mu_11, mu_20]).swapaxes(0, 1)
        return tensor.reshape((tensor.shape[0], 2, 2)) * u.pix**2

    @lazyproperty
    @use_detcat
    def _covariance(self):
        """
        The covariance matrix of the 2D Gaussian function that has the
        same second-order moments as the source, always as an iterable.
        """
        moments = self.moments_central
        if self.isscalar:
            moments = moments[np.newaxis, :]
        # ignore divide-by-zero RuntimeWarning
        with warnings.catch_warnings():
            warnings.simplefilter('ignore', RuntimeWarning)
            mu_norm = moments / moments[:, 0, 0][:, np.newaxis, np.newaxis]

        covar = np.array([mu_norm[:, 0, 2], mu_norm[:, 1, 1],
                          mu_norm[:, 1, 1], mu_norm[:, 2, 0]]).swapaxes(0, 1)
        covar = covar.reshape((covar.shape[0], 2, 2))

        # Modify the covariance matrix in the case of "infinitely" thin
        # detections. This follows SourceExtractor's prescription of
        # incrementally increasing the diagonal elements by 1/12.
        delta = 1.0 / 12
        delta2 = delta**2
        # ignore RuntimeWarning from NaN values in covar
        with warnings.catch_warnings():
            warnings.simplefilter('ignore', RuntimeWarning)
            covar_det = np.linalg.det(covar)
            idx = np.where(covar_det < delta2)[0]
            while idx.size > 0:  # pragma: no cover
                covar[idx, 0, 0] += delta
                covar[idx, 1, 1] += delta
                covar_det = np.linalg.det(covar)
                idx = np.where(covar_det < delta2)[0]
        return covar

    @lazyproperty
    @use_detcat
    @as_scalar
    def covariance(self):
        """
        The covariance matrix of the 2D Gaussian function that has the
        same second-order moments as the source.
        """
        return self._covariance * (u.pix**2)

    @lazyproperty
    @use_detcat
    @as_scalar
    def covariance_eigvals(self):
        """
        The two eigenvalues of the `covariance` matrix in decreasing
        order.
        """
        eigvals = np.empty((self.nlabels, 2))
        eigvals.fill(np.nan)
        # np.linalg.eigvals requires finite input values
        idx = np.unique(np.where(np.isfinite(self._covariance))[0])
        eigvals[idx] = np.linalg.eigvals(self._covariance[idx])

        # check for negative variance
        # (just in case covariance matrix is not positive (semi)definite)
        idx2 = np.unique(np.where(eigvals < 0)[0])  # pragma: no cover
        eigvals[idx2] = (np.nan, np.nan)  # pragma: no cover

        # sort each eigenvalue pair in descending order
        eigvals.sort(axis=1)
        eigvals = np.fliplr(eigvals)

        return eigvals * u.pix**2

    @lazyproperty
    @use_detcat
    @as_scalar
    def semimajor_sigma(self):
        """
        The 1-sigma standard deviation along the semimajor axis of the
        2D Gaussian function that has the same second-order central
        moments as the source.
        """
        eigvals = self.covariance_eigvals
        if self.isscalar:
            eigvals = eigvals[np.newaxis, :]
        # this matches SourceExtractor's A parameter
        return np.sqrt(eigvals[:, 0])

    @lazyproperty
    @use_detcat
    @as_scalar
    def semiminor_sigma(self):
        """
        The 1-sigma standard deviation along the semiminor axis of the
        2D Gaussian function that has the same second-order central
        moments as the source.
        """
        eigvals = self.covariance_eigvals
        if self.isscalar:
            eigvals = eigvals[np.newaxis, :]
        # this matches SourceExtractor's B parameter
        return np.sqrt(eigvals[:, 1])

    @lazyproperty
    @use_detcat
    @as_scalar
    def fwhm(self):
        r"""
        The circularized full width at half maximum (FWHM) of the 2D
        Gaussian function that has the same second-order central moments
        as the source.

        .. math::

           \mathrm{FWHM} & = 2 \sqrt{2 \ln(2)} \sqrt{0.5 (a^2 + b^2)}
           \\
                          & = 2 \sqrt{\ln(2) \ (a^2 + b^2)}

        where :math:`a` and :math:`b` are the 1-sigma lengths of the
        semimajor (`semimajor_sigma`) and semiminor (`semiminor_sigma`)
        axes, respectively.
        """
        return 2.0 * np.sqrt(np.log(2.0) * (self.semimajor_sigma**2
                                            + self.semiminor_sigma**2))

    @lazyproperty
    @use_detcat
    @as_scalar
    def orientation(self):
        """
        The angle between the ``x`` axis and the major axis of the 2D
        Gaussian function that has the same second-order moments as the
        source.  The angle increases in the counter-clockwise direction.
        """
        covar = self._covariance
        orient_radians = 0.5 * np.arctan2(2.0 * covar[:, 0, 1],
                                          (covar[:, 0, 0] - covar[:, 1, 1]))
        return orient_radians * 180.0 / np.pi * u.deg

    @lazyproperty
    @use_detcat
    @as_scalar
    def eccentricity(self):
        r"""
        The eccentricity of the 2D Gaussian function that has the same
        second-order moments as the source.

        The eccentricity is the fraction of the distance along the
        semimajor axis at which the focus lies.

        .. math:: e = \sqrt{1 - \frac{b^2}{a^2}}

        where :math:`a` and :math:`b` are the lengths of the semimajor
        and semiminor axes, respectively.
        """
        semimajor_var, semiminor_var = np.transpose(self.covariance_eigvals)
        return np.sqrt(1.0 - (semiminor_var / semimajor_var))

    @lazyproperty
    @use_detcat
    @as_scalar
    def elongation(self):
        r"""
        The ratio of the lengths of the semimajor and semiminor axes.

        .. math:: \mathrm{elongation} = \frac{a}{b}

        where :math:`a` and :math:`b` are the lengths of the semimajor
        and semiminor axes, respectively.
        """
        return self.semimajor_sigma / self.semiminor_sigma

    @lazyproperty
    @use_detcat
    @as_scalar
    def ellipticity(self):
        r"""
        1.0 minus the ratio of the lengths of the semimajor and
        semiminor axes.

        .. math:: \mathrm{ellipticity} = \frac{a - b}{a} = 1 - \frac{b}{a}

        where :math:`a` and :math:`b` are the lengths of the semimajor
        and semiminor axes, respectively.
        """
        return 1.0 - (self.semiminor_sigma / self.semimajor_sigma)

    @lazyproperty
    @use_detcat
    @as_scalar
    def covar_sigx2(self):
        r"""
        The ``(0, 0)`` element of the `covariance` matrix, representing
        :math:`\sigma_x^2`, in units of pixel**2.
        """
        return self._covariance[:, 0, 0] * u.pix**2

    @lazyproperty
    @use_detcat
    @as_scalar
    def covar_sigy2(self):
        r"""
        The ``(1, 1)`` element of the `covariance` matrix, representing
        :math:`\sigma_y^2`, in units of pixel**2.
        """
        return self._covariance[:, 1, 1] * u.pix**2

    @lazyproperty
    @use_detcat
    @as_scalar
    def covar_sigxy(self):
        r"""
        The ``(0, 1)`` and ``(1, 0)`` elements of the `covariance`
        matrix, representing :math:`\sigma_x \sigma_y`, in units of
        pixel**2.
        """
        return self._covariance[:, 0, 1] * u.pix**2

    @lazyproperty
    @use_detcat
    @as_scalar
    def cxx(self):
        r"""
        `SourceExtractor`_'s CXX ellipse parameter in units of
        pixel**(-2).

        The ellipse is defined as

            .. math::
                cxx (x - \bar{x})^2 + cxy (x - \bar{x}) (y - \bar{y}) +
                cyy (y - \bar{y})^2 = R^2

        where :math:`R` is a parameter which scales the ellipse (in
        units of the axes lengths). `SourceExtractor`_ reports that the
        isophotal limit of a source is well represented by :math:`R
        \approx 3`.
        """
        return ((np.cos(self.orientation) / self.semimajor_sigma)**2
                + (np.sin(self.orientation) / self.semiminor_sigma)**2)

    @lazyproperty
    @use_detcat
    @as_scalar
    def cyy(self):
        r"""
        `SourceExtractor`_'s CYY ellipse parameter in units of
        pixel**(-2).

        The ellipse is defined as

            .. math::
                cxx (x - \bar{x})^2 + cxy (x - \bar{x}) (y - \bar{y}) +
                cyy (y - \bar{y})^2 = R^2

        where :math:`R` is a parameter which scales the ellipse (in
        units of the axes lengths). `SourceExtractor`_ reports that the
        isophotal limit of a source is well represented by :math:`R
        \approx 3`.
        """
        return ((np.sin(self.orientation) / self.semimajor_sigma)**2
                + (np.cos(self.orientation) / self.semiminor_sigma)**2)

    @lazyproperty
    @use_detcat
    @as_scalar
    def cxy(self):
        r"""
        `SourceExtractor`_'s CXY ellipse parameter in units of
        pixel**(-2).

        The ellipse is defined as

            .. math::
                cxx (x - \bar{x})^2 + cxy (x - \bar{x}) (y - \bar{y}) +
                cyy (y - \bar{y})^2 = R^2

        where :math:`R` is a parameter which scales the ellipse (in
        units of the axes lengths). `SourceExtractor`_ reports that the
        isophotal limit of a source is well represented by :math:`R
        \approx 3`.
        """
        return (2.0 * np.cos(self.orientation) * np.sin(self.orientation)
                * ((1.0 / self.semimajor_sigma**2)
                   - (1.0 / self.semiminor_sigma**2)))

    @lazyproperty
    @use_detcat
    @as_scalar
    def gini(self):
        r"""
        The `Gini coefficient
        <https://en.wikipedia.org/wiki/Gini_coefficient>`_ of the
        source.

        The Gini coefficient is calculated using the prescription from
        `Lotz et al. 2004
        <https://ui.adsabs.harvard.edu/abs/2004AJ....128..163L/abstract>`_
        as:

        .. math::
            G = \frac{1}{\left | \bar{x} \right | n (n - 1)}
            \sum^{n}_{i} (2i - n - 1) \left | x_i \right |

        where :math:`\bar{x}` is the mean over pixel values :math:`x_i`
        within the source segment.

        The Gini coefficient is a way of measuring the inequality in a
        given set of values. In the context of galaxy morphology, it
        measures how the light of a galaxy image is distributed among
        its pixels. A Gini coefficient value of 0 corresponds to a
        galaxy image with the light evenly distributed over all pixels
        while a Gini coefficient value of 1 represents a galaxy image
        with all its light concentrated in just one pixel.
        """
        gini = []
        for arr in self._data_values:
            if np.all(np.isnan(arr)):
                gini.append(np.nan)
                continue
            npix = np.size(arr)
            normalization = np.abs(np.mean(arr)) * npix * (npix - 1)
            kernel = ((2.0 * np.arange(1, npix + 1) - npix - 1)
                      * np.abs(np.sort(arr)))
            gini.append(np.sum(kernel) / normalization)
        return np.array(gini)

    @lazyproperty
    def _local_background_apertures(self):
        """
        The `~photutils.aperture.RectangularAnnulus` aperture used to
        estimate the local background.
        """
        if self.localbkg_width == 0:
            return self._null_objects

        apertures = []
        for bbox_ in self._bbox:
            xpos = 0.5 * (bbox_.ixmin + bbox_.ixmax - 1)
            ypos = 0.5 * (bbox_.iymin + bbox_.iymax - 1)
            scale = 1.5
            width_in = (bbox_.ixmax - bbox_.ixmin) * scale
            width_out = width_in + 2 * self.localbkg_width
            height_in = (bbox_.iymax - bbox_.iymin) * scale
            height_out = height_in + 2 * self.localbkg_width
            apertures.append(RectangularAnnulus((xpos, ypos), width_in,
                                                width_out, height_out,
                                                height_in, theta=0.0))
        return apertures

    @lazyproperty
    @use_detcat
    @as_scalar
    def local_background_aperture(self):
        """
        The `~photutils.aperture.RectangularAnnulus` aperture used to
        estimate the local background.
        """
        return self._local_background_apertures

    @lazyproperty
    def _local_background(self):
        """
        The local background value (per pixel) estimated using a
        rectangular annulus aperture around the source.

        Pixels are masked where the input ``mask`` is `True`, where the
        input ``data`` is non-finite, and within any non-zero pixel
        label in the segmentation image.

        This property is always an `~numpy.ndarray` without units.
        """
        if self.localbkg_width == 0:
            local_bkgs = np.zeros(self.nlabels)
        else:
            sigma_clip = SigmaClip(sigma=3.0, cenfunc='median', maxiters=20)
            bkg_func = SExtractorBackground(sigma_clip)
            bkg_apers = self._local_background_apertures

            local_bkgs = []
            for aperture in bkg_apers:
                aperture_mask = aperture.to_mask(method='center')
                slc_lg, slc_sm = aperture_mask.get_overlap_slices(
                    self._data.shape)

                data_cutout = self._data[slc_lg].astype(float, copy=True)
                # all non-zero segment labels are masked
                segm_mask_cutout = self._segment_img.data[slc_lg].astype(bool)
                if self._mask is None:
                    mask_cutout = None
                else:
                    mask_cutout = self._mask[slc_lg]
                data_mask_cutout = self._make_cutout_data_mask(data_cutout,
                                                               mask_cutout)
                data_mask_cutout |= segm_mask_cutout

                aperweight_cutout = aperture_mask.data[slc_sm]
                good_mask = (aperweight_cutout > 0) & ~data_mask_cutout

                data_cutout *= aperweight_cutout
                data_values = data_cutout[good_mask]  # 1D array

                # check not enough unmasked pixels
                if len(data_values) < 10:  # pragma: no cover
                    local_bkgs.append(0.0)
                    continue
                local_bkgs.append(bkg_func(data_values))
            local_bkgs = np.array(local_bkgs)

        local_bkgs[self._all_masked] = np.nan
        return local_bkgs

    @lazyproperty
    @as_scalar
    def local_background(self):
        """
        The local background value (per pixel) estimated using a
        rectangular annulus aperture around the source.
        """
        bkg = self._local_background
        if self._data_unit is not None:
            bkg <<= self._data_unit
        return bkg

    def _make_aperture_data(self, label, xcentroid, ycentroid, aperture_bbox,
                            local_background, make_error=True):
        """
        Make cutouts of data, error, and mask arrays for aperture
        photometry (e.g., circular or Kron).

        Neighboring sources can be included, masked, or corrected based
        on the ``apermask_method`` keyword.
        """
        # make cutouts of the data based on the aperture bbox
        slc_lg, slc_sm = aperture_bbox.get_overlap_slices(self._data.shape)
        if slc_lg is None:
            return (None,) * 5

        data = self._data[slc_lg].astype(float) - local_background

        if self._mask is None:
            mask_cutout = None
        else:
            mask_cutout = self._mask[slc_lg]
        data_mask = self._make_cutout_data_mask(data, mask_cutout)

        if make_error and self._error is not None:
            error = self._error[slc_lg]
        else:
            error = None

        # calculate cutout centroid position
        cutout_xycen = (xcentroid - max(0, aperture_bbox.ixmin),
                        ycentroid - max(0, aperture_bbox.iymin))

        # mask or correct neighboring sources
        if self.apermask_method != 'none':
            segment_img = self._segment_img.data[slc_lg]
            segm_mask = np.logical_and(segment_img != label,
                                       segment_img != 0)
        if self.apermask_method == 'mask':
            mask = data_mask | segm_mask
        else:
            mask = data_mask

        if self.apermask_method == 'correct':
            from photutils.segmentation.utils import _mask_to_mirrored_value
            data = _mask_to_mirrored_value(data, segm_mask, cutout_xycen,
                                           mask=mask)
            if error is not None:
                error = _mask_to_mirrored_value(error, segm_mask, cutout_xycen,
                                                mask=mask)

        return data, error, mask, cutout_xycen, slc_sm

    def _make_circular_apertures(self, radius):
        """
        Make circular aperture for each source.

        The aperture for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        it will be used for the source centroids.

        Parameters
        ----------
        radius : float, 1D `~numpy.ndarray`
            The radius of the circle in pixels.

        Returns
        -------
        result : list of `~photutils.aperture.CircularAperture`
            A list of `~photutils.aperture.CircularAperture` instances.
            The aperture will be `None` where the source `centroid`
            position is not finite or where the source is completely
            masked.
        """
        radius = np.broadcast_to(radius, len(self._xcentroid))
        if np.any(radius <= 0):
            raise ValueError('radius must be > 0')

        apertures = []
        for (xcen, ycen, radius_, all_masked) in zip(self._xcentroid,
                                                     self._ycentroid,
                                                     radius,
                                                     self._all_masked):
            if all_masked or np.any(~np.isfinite((xcen, ycen, radius_))):
                apertures.append(None)
                continue

            apertures.append(CircularAperture((xcen, ycen), r=radius_))

        return apertures

    @as_scalar
    def make_circular_apertures(self, radius):
        """
        Make circular aperture for each source.

        The aperture for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        then its `centroid` values will be used.

        Parameters
        ----------
        radius : float
            The radius of the circle in pixels.

        Returns
        -------
        result : `~photutils.aperture.CircularAperture` or \
                 list of `~photutils.aperture.CircularAperture`
            The circular aperture for each source. The aperture will be
            `None` where the source `centroid` position is not finite or
            where the source is completely masked.
        """
        return self._make_circular_apertures(radius)

    @as_scalar
    def plot_circular_apertures(self, radius, ax=None, origin=(0, 0),
                                **kwargs):
        """
        Plot circular apertures for each source on a matplotlib
        `~matplotlib.axes.Axes` instance.

        The aperture for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        then its `centroid` values will be used.

        An aperture will not be plotted for sources where the source
        `centroid` position is not finite or where the source is
        completely masked.

        Parameters
        ----------
        radius : float
            The radius of the circle in pixels.

        ax : `matplotlib.axes.Axes` or `None`, optional
            The matplotlib axes on which to plot.  If `None`, then the
            current `~matplotlib.axes.Axes` instance is used.

        origin : array_like, optional
            The ``(x, y)`` position of the origin of the displayed
            image.

        **kwargs : `dict`
            Any keyword arguments accepted by
            `matplotlib.patches.Patch`.

        Returns
        -------
        patch : `~matplotlib.patches.Patch` or \
                list of `~matplotlib.patches.Patch`
            The matplotlib patch for each plotted aperture. The patches
            can be used, for example, when adding a plot legend.
        """
        apertures = self._make_circular_apertures(radius)
        patches = []
        for aperture in apertures:
            if aperture is not None:
                aperture.plot(ax=ax, origin=origin, **kwargs)
                patches.append(aperture._to_patch(origin=origin, **kwargs))
        return patches

    def circular_photometry(self, radius, name=None, overwrite=False):
        """
        Perform circular aperture photometry for each source.

        The circular aperture for each source will be centered at
        its `centroid` position. If a ``detection_cat`` was input to
        `SourceCatalog`, then its `centroid` values will be used.

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        Parameters
        ----------
        radius : float
            The radius of the circle in pixels.

        name : str or `None`, optional
            The prefix name which will be used to define attribute
            names for the flux and flux error. The attribute names
            ``[name]_flux`` and ``[name]_fluxerr`` will store the
            photometry results. For example, these names can then be
            included in the `to_table` ``columns`` keyword list to
            output the results in the table.

        overwrite : bool, optional
            If True, overwrite the attribute ``name`` if it exists.

        Returns
        -------
        flux, fluxerr : float or `~numpy.ndarray` of floats
            The aperture fluxes and flux errors. NaN will be returned
            where the aperture is `None` (e.g., where the source
            `centroid` position is not finite or the source is
            completely masked).
        """
        if radius <= 0:
            raise ValueError('radius must be > 0')

        apertures = self._make_circular_apertures(radius)
        kwargs = self._apermask_kwargs['circ']
        flux, fluxerr = self._aperture_photometry(apertures,
                                                  desc='circular_photometry',
                                                  **kwargs)

        if self._data_unit is not None:
            flux <<= self._data_unit
            fluxerr <<= self._data_unit

        if self.isscalar:
            flux = flux[0]
            fluxerr = fluxerr[0]

        if name is not None:
            flux_name = f'{name}_flux'
            fluxerr_name = f'{name}_fluxerr'
            self.add_extra_property(flux_name, flux, overwrite=overwrite)
            self.add_extra_property(fluxerr_name, fluxerr,
                                    overwrite=overwrite)

        return flux, fluxerr

    def _make_elliptical_apertures(self, scale=6.0):
        """
        Return a list of elliptical apertures based on the scaled
        isophotal shape of the sources.

        If a ``detection_cat`` was input to `SourceCatalog`, then its
        source `centroid` and shape parameters will be used.

        If scale is zero (due to a minimum circular radius set in
        ``kron_params``) then a circular aperture will be returned with
        the minimum circular radius.

        Parameters
        ----------
        scale : float or `~numpy.ndarray`, optional
            The scale factor to apply to the ellipse major and minor
            axes. The default value of 6.0 is roughly two times the
            isophotal extent of the source. A `~numpy.ndarray` input
            must be a 1D array of length ``nlabels``.

        Returns
        -------
        result : list of `~photutils.aperture.EllipticalAperture`
            A list of `~photutils.aperture.EllipticalAperture`
            instances. The aperture will be `None` where the source
            `centroid` position or elliptical shape parameters are not
            finite or where the source is completely masked.
        """
        xcen = self._xcentroid
        ycen = self._ycentroid
        major_size = self.semimajor_sigma.value * scale
        minor_size = self.semiminor_sigma.value * scale
        theta = self.orientation.to(u.radian).value
        if self.isscalar:
            major_size = (major_size,)
            minor_size = (minor_size,)
            theta = (theta,)

        aperture = []
        for values in zip(xcen, ycen, major_size, minor_size, theta,
                          self._all_masked):
            if values[-1] or np.any(~np.isfinite(values[:-1])):
                aperture.append(None)
                continue

            # kron_radius = 0 -> scale = 0 -> major/minor_size = 0
            if values[2] == 0 and values[3] == 0:
                aperture.append(CircularAperture((values[0], values[1]),
                                                 r=self.kron_params[2]))
                continue

            (xcen_, ycen_, major_, minor_, theta_) = values[:-1]
            aperture.append(EllipticalAperture((xcen_, ycen_), major_, minor_,
                                               theta=theta_))

        return aperture

    @lazyproperty
    @use_detcat
    def _measured_kron_radius(self):
        r"""
        The *unscaled* first-moment Kron radius, always as an array
        (without units).

        The returned value is the measured Kron radius without applying
        any minimum Kron or circular radius.
        """
        apertures = self._make_elliptical_apertures(scale=6.0)
        cxx = self.cxx.value
        cxy = self.cxy.value
        cyy = self.cyy.value
        if self.isscalar:
            cxx = (cxx,)
            cxy = (cxy,)
            cyy = (cyy,)

        labels = self.labels
        if self.progress_bar:
            desc = 'kron_radius'
            labels = add_progress_bar(labels, desc=desc)  # pragma: no cover

        kron_radius = []
        for (label, aperture, cxx_, cxy_, cyy_) in zip(labels, apertures,
                                                       cxx, cxy, cyy):
            if aperture is None:
                kron_radius.append(np.nan)
                continue

            xcen, ycen = aperture.positions
            # use 'center' (whole pixels) to compute Kron radius
            aperture_mask = aperture.to_mask(method='center')

            # prepare cutouts of the data based on the aperture size
            # local background explicitly set to zero for SE agreement
            data, _, mask, xycen, slc_sm = self._make_aperture_data(
                label, xcen, ycen, aperture_mask.bbox, 0.0, make_error=False)

            xval = np.arange(data.shape[1]) - xycen[0]
            yval = np.arange(data.shape[0]) - xycen[1]
            xx, yy = np.meshgrid(xval, yval)
            rr = np.sqrt(cxx_ * xx**2 + cxy_ * xx * yy + cyy_ * yy**2)

            aperture_weights = aperture_mask.data[slc_sm]
            pixel_mask = (aperture_weights > 0) & ~mask  # good pixels

            # ignore RuntimeWarning for invalid data values
            with warnings.catch_warnings():
                warnings.simplefilter('ignore', RuntimeWarning)
                flux_numer = np.sum((aperture_weights * data * rr)[pixel_mask])
                flux_denom = np.sum((aperture_weights * data)[pixel_mask])

            # set Kron radius to the minimum Kron radius if numerator or
            # denominator is negative
            if flux_numer <= 0 or flux_denom <= 0:
                kron_radius.append(self.kron_params[1])
                continue

            kron_radius.append(flux_numer / flux_denom)

        return np.array(kron_radius)

    @as_scalar
    def _calc_kron_radius(self, kron_params):
        """
        Calculate the *unscaled* first-moment Kron radius, applying any
        minimum Kron or circular radius to the measured Kron radius.

        Returned as a Quantity array or scalar (if self isscalar) with
        pixel units.
        """
        kron_radius = self._measured_kron_radius.copy()
        # set minimum (unscaled) kron radius
        kron_radius[kron_radius < kron_params[1]] = kron_params[1]

        # check for minimum circular radius
        if len(kron_params) == 3:
            major_sigma = self.semimajor_sigma.value
            minor_sigma = self.semiminor_sigma.value
            circ_radius = (kron_params[0] * kron_radius
                           * np.sqrt(major_sigma * minor_sigma))
            kron_radius[circ_radius <= kron_params[2]] = 0.0

        return kron_radius << u.pix

    @lazyproperty
    @use_detcat
    @as_scalar
    def kron_radius(self):
        r"""
        The *unscaled* first-moment Kron radius.

        The *unscaled* first-moment Kron radius is given by:

        .. math::
            r_k = \frac{\sum_{i \in A} \ r_i I_i}{\sum_{i \in A} I_i}

        where :math:`I_i` are the data values and the sum is over
        pixels in an elliptical aperture whose axes are defined by
        six times the semimajor (`semimajor_sigma`) and semiminor
        axes (`semiminor_sigma`) at the calculated `orientation` (all
        properties derived from the central image moments of the
        source). :math:`r_i` is the elliptical "radius" to the pixel
        given by:

        .. math::
            r_i^2 = cxx (x_i - \bar{x})^2 +
                cxy (x_i - \bar{x})(y_i - \bar{y}) +
                cyy (y_i - \bar{y})^2

        where :math:`\bar{x}` and :math:`\bar{y}` represent the source
        `centroid` and the coefficients are based on image moments
        (`cxx`, `cxy`, and `cyy`).

        The `kron_radius` value is the unscaled moment value. The
        minimum unscaled radius can be set using the second element of
        the `SourceCatalog` ``kron_params`` keyword.

        If either the numerator or denominator above is less than
        or equal to 0, then the minimum unscaled Kron radius
        (``kron_params[1]``) will be used.

        The Kron aperture is calculated for each source using its shape
        parameters, `kron_radius`, and the ``kron_params`` scaling and
        minimum values input into `SourceCatalog`. The Kron aperture is
        used to compute the Kron photometry.

        If ``kron_params[0]`` * `kron_radius` * sqrt(`semimajor_sigma` *
        `semiminor_sigma`) is less than or equal to the minimum circular
        radius (``kron_params[2]``), then the Kron radius will be set to
        zero and the Kron aperture will be a circle with this minimum
        radius.

        If the source is completely masked, then ``np.nan`` will be
        returned for both the Kron radius and Kron flux (the Kron
        aperture will be `None`).

        If a ``detection_cat`` was input to `SourceCatalog`, then its
        ``kron_radius`` will be returned.

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.
        """
        return self._calc_kron_radius(self.kron_params)

    def _make_kron_apertures(self, kron_params):
        """
        Make Kron apertures for each source, always returned as a list.
        """
        # NOTE: if kron_radius = NaN, scale = NaN and kron_aperture = None
        kron_radius = self._calc_kron_radius(kron_params)
        scale = kron_radius.value * kron_params[0]
        kron_apertures = self._make_elliptical_apertures(scale=scale)
        return kron_apertures

    @lazyproperty
    @use_detcat
    @as_scalar
    def kron_aperture(self):
        r"""
        The elliptical (or circular) Kron aperture.

        The Kron aperture is calculated for each source using its shape
        parameters, `kron_radius`, and the ``kron_params`` scaling and
        minimum values input into `SourceCatalog`. The Kron aperture is
        used to compute the Kron photometry.

        If ``kron_params[0]`` * `kron_radius` * sqrt(`semimajor_sigma` *
        `semiminor_sigma`) is less than or equal to the minimum circular
        radius (``kron_params[2]``), then the Kron aperture will be a
        circle with this minimum radius.

        The aperture will be `None` where the source `centroid` position
        or elliptical shape parameters are not finite or where the
        source is completely masked.

        If a ``detection_cat`` was input to `SourceCatalog`, then its
        ``kron_aperture`` will be returned.
        """
        return self._make_kron_apertures(self.kron_params)

    @as_scalar
    def make_kron_apertures(self, kron_params=None):
        """
        Make Kron apertures for each source.

        The aperture for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        then its `centroid` values will be used.

        Note that changing ``kron_params`` from the values
        input into `SourceCatalog` does not change the Kron
        apertures (`kron_aperture`) and photometry (`kron_flux` and
        `kron_fluxerr`) in the source catalog. This method should
        be used only to explore alternative ``kron_params`` with a
        detection image.

        Parameters
        ----------
        kron_params : list of 2 or 3 floats or `None`, optional
            A list of parameters used to determine the Kron aperture.
            The first item is the scaling parameter of the unscaled
            Kron radius and the second item represents the minimum
            value for the unscaled Kron radius in pixels. The optional
            third item is the minimum circular radius in pixels. If
            ``kron_params[0]`` * `kron_radius` * sqrt(`semimajor_sigma`
            * `semiminor_sigma`) is less than or equal to this radius,
            then the Kron aperture will be a circle with this minimum
            radius. If `None`, then the ``kron_params`` input into
            `SourceCatalog` will be used (the apertures will be the same
            as those in `kron_aperture`).

        Returns
        -------
        result : `~photutils.aperture.PixelAperture` \
                 or list of `~photutils.aperture.PixelAperture`
            The Kron apertures for each source. Each aperture will
            either be a `~photutils.aperture.EllipticalAperture`,
            `~photutils.aperture.CircularAperture`, or `None`. The
            aperture will be `None` where the source `centroid` position
            or elliptical shape parameters are not finite or where the
            source is completely masked.
        """
        if kron_params is None:
            return self.kron_aperture
        return self._make_kron_apertures(kron_params)

    @as_scalar
    def plot_kron_apertures(self, kron_params=None, ax=None, origin=(0, 0),
                            **kwargs):
        """
        Plot Kron apertures for each source on a matplotlib
        `~matplotlib.axes.Axes` instance.

        The aperture for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        then its `centroid` values will be used.

        An aperture will not be plotted for sources where the source
        `centroid` position or elliptical shape parameters are not
        finite or where the source is completely masked.

        Note that changing ``kron_params`` from the values
        input into `SourceCatalog` does not change the Kron
        apertures (`kron_aperture`) and photometry (`kron_flux` and
        `kron_fluxerr`) in the source catalog. This method should be
        used only to visualize/explore alternative ``kron_params`` with
        a detection image.

        Parameters
        ----------
        kron_params : list of 2 or 3 floats or `None`, optional
            A list of parameters used to determine the Kron aperture.
            The first item is the scaling parameter of the unscaled
            Kron radius and the second item represents the minimum
            value for the unscaled Kron radius in pixels. The optional
            third item is the minimum circular radius in pixels. If
            ``kron_params[0]`` * `kron_radius` * sqrt(`semimajor_sigma`
            * `semiminor_sigma`) is less than or equal to this radius,
            then the Kron aperture will be a circle with this minimum
            radius. If `None`, then the ``kron_params`` input into
            `SourceCatalog` will be used (the apertures will be the same
            as those in `kron_aperture`).

        ax : `matplotlib.axes.Axes` or `None`, optional
            The matplotlib axes on which to plot.  If `None`, then the
            current `~matplotlib.axes.Axes` instance is used.

        origin : array_like, optional
            The ``(x, y)`` position of the origin of the displayed
            image.

        **kwargs : `dict`
            Any keyword arguments accepted by
            `matplotlib.patches.Patch`.

        Returns
        -------
        patch : list of `~matplotlib.patches.Patch`
            A list of matplotlib patches for the plotted aperture. The
            patches can be used, for example, when adding a plot legend.
        """
        if kron_params is None:
            apertures = self.kron_aperture
            if self.isscalar:
                apertures = (apertures,)
        else:
            apertures = self._make_kron_apertures(kron_params)

        patches = []
        for aperture in apertures:
            if aperture is not None:
                aperture.plot(ax=ax, origin=origin, **kwargs)
                patches.append(aperture._to_patch(origin=origin, **kwargs))
        return patches

    def _aperture_photometry(self, apertures, desc='', **kwargs):
        """
        Perform aperture photometry on cutouts of the data and optional
        error arrays.

        The appropriate ``apermask_method`` is applied to the cutouts to
        handle neighboring sources.

        Parameters
        ----------
        apertures : list of `PixelAperture`
            A list of the apertures.

        desc : str, optional
            The description displayed before the progress bar.

        **kwargs : dict
            Additional keyword arguments passed to the aperture
            ``to_mask`` method.

        Returns
        -------
        flux, fluxerr : 1D `~numpy.ndaray`
            The flux and flux error arrays.
        """
        labels = self.labels
        if self.progress_bar:
            labels = add_progress_bar(labels, desc=desc)  # pragma: no cover

        flux = []
        fluxerr = []
        for label, aperture, bkg in zip(labels, apertures,
                                        self._local_background):
            # return NaN for completely masked sources or sources where
            # the centroid is not finite
            if aperture is None:
                flux.append(np.nan)
                fluxerr.append(np.nan)
                continue

            xcen, ycen = aperture.positions
            aperture_mask = aperture.to_mask(**kwargs)

            # prepare cutouts of the data based on the aperture size
            data, error, mask, _, slc_sm = self._make_aperture_data(
                label, xcen, ycen, aperture_mask.bbox, bkg)

            aperture_weights = aperture_mask.data[slc_sm]
            pixel_mask = (aperture_weights > 0) & ~mask  # good pixels
            # ignore RuntimeWarning for invalid data or error values
            with warnings.catch_warnings():
                warnings.simplefilter('ignore', RuntimeWarning)
                values = (aperture_weights * data)[pixel_mask]
                if values.shape == (0,):
                    flux_ = np.nan
                else:
                    flux_ = np.sum(values)
                flux.append(flux_)

                if error is None:
                    fluxerr_ = np.nan
                else:
                    values = (aperture_weights * error**2)[pixel_mask]
                    if values.shape == (0,):
                        fluxerr_ = np.nan
                    else:
                        fluxerr_ = np.sqrt(np.sum(values))
                fluxerr.append(fluxerr_)

        flux = np.array(flux)
        fluxerr = np.array(fluxerr)

        return flux, fluxerr

    def _calc_kron_photometry(self, kron_params=None):
        """
        Calculate the flux and flux error in the Kron aperture (without
        units).

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        If the Kron aperture is `None`, then ``np.nan`` will be
        returned.

        If ``detection_cat`` is input, then its `centroid` values will
        be used.

        Returns
        -------
        kron_flux, kron_fluxerr : tuple of `~numpy.ndarray`
            The Kron flux and flux error.
        """
        if kron_params is None:
            kron_aperture = self.kron_aperture
            if self.isscalar:
                kron_aperture = (kron_aperture,)
        else:
            kron_params = self._validate_kron_params(kron_params)
            kron_aperture = self._make_kron_apertures(kron_params)

        kwargs = self._apermask_kwargs['kron']
        flux, fluxerr = self._aperture_photometry(kron_aperture,
                                                  desc='kron_photometry',
                                                  **kwargs)

        return flux, fluxerr

    def kron_photometry(self, kron_params, name=None, overwrite=False):
        """
        Perform photometry for each source using an elliptical Kron
        aperture.

        This method can be used to calculate the Kron photometry using
        alternate ``kron_params`` (e.g., different scalings of the Kron
        radius).

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        Parameters
        ----------
        kron_params : list of 2 or 3 floats, optional
            A list of parameters used to determine the Kron aperture.
            The first item is the scaling parameter of the unscaled
            Kron radius and the second item represents the minimum
            value for the unscaled Kron radius in pixels. The optional
            third item is the minimum circular radius in pixels. If
            ``kron_params[0]`` * `kron_radius` * sqrt(`semimajor_sigma`
            * `semiminor_sigma`) is less than or equal to this radius,
            then the Kron aperture will be a circle with this minimum
            radius.

        name : str or `None`, optional
            The prefix name which will be used to define attribute
            names for the Kron flux and flux error. The attribute
            names ``[name]_flux`` and ``[name]_fluxerr`` will store
            the photometry results. For example, these names can then
            be included in the `to_table` ``columns`` keyword list to
            output the results in the table.

        overwrite : bool, optional
            If True, overwrite the attribute ``name`` if it exists.

        Returns
        -------
        flux, fluxerr : float or `~numpy.ndarray` of floats
            The aperture fluxes and flux errors. NaN will be returned
            where the aperture is `None` (e.g., where the source
            `centroid` position or elliptical shape parameters are not
            finite or where the source is completely masked).
        """
        kron_flux, kron_fluxerr = self._calc_kron_photometry(kron_params)
        if self._data_unit is not None:
            kron_flux <<= self._data_unit
            kron_fluxerr <<= self._data_unit

        if self.isscalar:
            kron_flux = kron_flux[0]
            kron_fluxerr = kron_fluxerr[0]

        if name is not None:
            flux_name = f'{name}_flux'
            fluxerr_name = f'{name}_fluxerr'
            self.add_extra_property(flux_name, kron_flux, overwrite=overwrite)
            self.add_extra_property(fluxerr_name, kron_fluxerr,
                                    overwrite=overwrite)

        return kron_flux, kron_fluxerr

    @lazyproperty
    def _kron_photometry(self):
        """
        The flux and flux error in the Kron aperture (without units).

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        If the Kron aperture is `None`, then ``np.nan`` will be
        returned. This will occur where the source `centroid` position
        or elliptical shape parameters are not finite or where the
        source is completely masked.
        """
        return np.transpose(self._calc_kron_photometry(kron_params=None))

    @lazyproperty
    @as_scalar
    def kron_flux(self):
        """
        The flux in the Kron aperture.

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        If the Kron aperture is `None`, then ``np.nan`` will be
        returned. This will occur where the source `centroid` position
        or elliptical shape parameters are not finite or where the
        source is completely masked.
        """
        kron_flux = self._kron_photometry[:, 0]
        if self._data_unit is not None:
            kron_flux <<= self._data_unit
        return kron_flux

    @lazyproperty
    @as_scalar
    def kron_fluxerr(self):
        """
        The flux error in the Kron aperture.

        See the `SourceCatalog` ``apermask_method`` keyword for options
        to mask neighboring sources.

        If the Kron aperture is `None`, then ``np.nan`` will be
        returned. This will occur where the source `centroid` position
        or elliptical shape parameters are not finite or where the
        source is completely masked.
        """
        kron_fluxerr = self._kron_photometry[:, 1]
        if self._data_unit is not None:
            kron_fluxerr <<= self._data_unit
        return kron_fluxerr

    @lazyproperty
    @use_detcat
    def _max_circular_kron_radius(self):
        """
        The maximum circular Kron radius used as the upper limit of
        fluxfrac_radius.
        """
        semimajor_sig = self.semimajor_sigma.value
        kron_radius = self.kron_radius.value
        radius = semimajor_sig * kron_radius * self.kron_params[0]
        mask = radius == 0
        if np.any(mask):
            radius[mask] = self.kron_params[2]
        if self.isscalar:
            radius = np.array([radius])
        return radius

    @staticmethod
    def _fluxfrac_radius_fcn(radius, data, mask, aperture, normflux, kwargs):
        """
        Function whose root is found to compute the fluxfrac_radius.
        """
        aperture.r = radius
        flux, _ = aperture.do_photometry(data, mask=mask, **kwargs)
        return 1.0 - (flux[0] / normflux)

    @lazyproperty
    @use_detcat
    def _fluxfrac_optimizer_args(self):
        kron_flux = self._kron_photometry[:, 0]  # unitless
        max_radius = self._max_circular_kron_radius
        kwargs = self._apermask_kwargs['fluxfrac']

        labels = self.labels
        if self.progress_bar:
            desc = 'fluxfrac_radius prep'
            labels = add_progress_bar(labels, desc=desc)  # pragma: no cover

        args = []
        for label, xcen, ycen, kronflux, bkg, max_radius_ in zip(
                labels, self._xcentroid, self._ycentroid,
                kron_flux, self._local_background, max_radius):

            if (np.any(~np.isfinite((xcen, ycen, kronflux, max_radius_)))
                    or kronflux == 0):
                args.append(None)
                continue

            aperture = CircularAperture((xcen, ycen), r=max_radius_)
            aperture_mask = aperture.to_mask(**kwargs)

            # prepare cutouts of the data based on the maximum aperture size
            data, _, mask, xycen, _ = self._make_aperture_data(
                label, xcen, ycen, aperture_mask.bbox, bkg,
                make_error=False)

            aperture.positions = xycen
            args.append([data, mask, aperture, kronflux, kwargs, max_radius_])

        return args

    @as_scalar
    def fluxfrac_radius(self, fluxfrac, name=None, overwrite=False):
        """
        Calculate the circular radius that encloses the specified
        fraction of the Kron flux.

        To estimate the half-light radius, use ``fluxfrac = 0.5``.

        Parameters
        ----------
        fluxfrac : float
            The fraction of the Kron flux at which to find the circular
            radius.

        name : str or `None`, optional
            The attribute name which will be assigned to the value
            of the output array. For example, this name can then be
            included in the `to_table` ``columns`` keyword list to
            output the results in the table.

        overwrite : bool, optional
            If True, overwrite the attribute ``name`` if it exists.

        Returns
        -------
        radius : 1D `~numpy.ndarray`
            The circular radius that encloses the specified fraction of
            the Kron flux. NaN is returned where no solution was found
            or where the Kron flux is zero or non-finite.
        """
        if fluxfrac <= 0 or fluxfrac > 1:
            raise ValueError('fluxfrac must be > 0 and <= 1')

        from scipy.optimize import root_scalar

        args = self._fluxfrac_optimizer_args
        if self.progress_bar:
            desc = 'fluxfrac_radius'
            args = add_progress_bar(args, desc=desc)  # pragma: no cover

        radius = []
        for fluxfrac_args in args:
            if fluxfrac_args is None:
                radius.append(np.nan)
                continue

            max_radius = fluxfrac_args[-1]
            args = fluxfrac_args[:-1]
            args[3] *= fluxfrac
            args = tuple(args)

            # Try to find the root of self._fluxfrac_radius_fnc, which
            # is bracketed by a min and max radius. A ValueError is
            # raised if the bracket points do not have different signs,
            # indicating no solution or multiple solutions (e.g., a
            # multi-valued function). This can happen when at some
            # radius, flux starts decreasing with increasing radius (due
            # to negative data values), resulting in multiple possible
            # solutions. If no solution is found, we iteratively
            # decrease the max radius to narrow the bracket range until
            # the root is found. If max radius drops below the min
            # radius (0.1), then no solution is possible and NaN will be
            # returned as the result.
            found = False
            min_radius = 0.1
            max_radius_delta = 1.0
            while max_radius > min_radius and found is False:
                try:
                    bracket = [min_radius, max_radius]
                    result = root_scalar(self._fluxfrac_radius_fcn, args=args,
                                         bracket=bracket, method='brentq')
                    result = result.root
                    found = True
                except ValueError:  # pragma: no cover
                    # ValueError is raised if the bracket points do not
                    # have different signs
                    max_radius -= max_radius_delta

            # no solution found between min_radius and max_radius
            if found is False:
                result = np.nan

            radius.append(result)

        result = np.array(radius) << u.pix

        if name is not None:
            self.add_extra_property(name, result, overwrite=overwrite)

        return result

    @as_scalar
    def make_cutouts(self, shape, mode='partial', fill_value=np.nan):
        """
        Make cutout arrays for each source.

        The cutout for each source will be centered at its `centroid`
        position. If a ``detection_cat`` was input to `SourceCatalog`,
        then its `centroid` values will be used.

        Parameters
        ----------
        shape : 2-tuple
            The cutout shape along each axis in ``(ny, nx)`` order.

        mode : {'partial', 'trim'}, optional
            The mode used for extracting the cutout array. In
            ``'partial'`` mode, positions in the cutout array that
            do not overlap with the large array will be filled with
            ``fill_value``. In ``'trim'`` mode, only the overlapping
            elements are returned, thus the resulting small array may be
            smaller than the requested ``shape``.

        fill_value : number, optional
            If ``mode='partial'``, the value to fill pixels in the
            extracted cutout array that do not overlap with the input
            ``array_large``. ``fill_value`` will be changed to have
            the same ``dtype`` as the ``array_large`` array, with
            one exception. If ``array_large`` has integer type and
            ``fill_value`` is ``np.nan``, then a `ValueError` will be
            raised.

        Returns
        -------
        cutouts : `~photutils.utils.CutoutImage` \
                  or list of `~photutils.utils.CutoutImage`
            The `~photutils.utils.CutoutImage` for each source. The
            cutout will be `None` where the source `centroid` position
            is not finite or where the source is completely masked.
        """
        if mode not in ('partial', 'trim'):
            raise ValueError('mode must be "partial" or "trim"')

        cutouts = []
        for (xcen, ycen, all_masked) in zip(self._xcentroid,
                                            self._ycentroid,
                                            self._all_masked):

            if all_masked or np.any(~np.isfinite((xcen, ycen))):
                cutouts.append(None)
                continue

            cutouts.append(CutoutImage(self._data, (ycen, xcen), shape,
                                       mode=mode, fill_value=fill_value))

        return cutouts
