from .analysis import KinaseActivityAnalyzer, KinaseActivityResult
from .core_processing import CoreProcessingResult
from .dataset import PhosphoDataset
from .dataset_preprocessing import DatasetPreprocessing
from .dataset_schema import DatasetSchema
from .dataset_site_matrix import DatasetSiteMatrix
from .pipeline import CoreOutputs, PhosRPipeline
from .prediction import KinasePredictionResult
from .site_matrix_builder import SiteMatrixResult
from .workflow import KinaseWorkflow, KinaseWorkflowResult
from .writers import CoreOutputWriter

__all__ = [
    "CoreOutputWriter",
    "CoreOutputs",
    "CoreProcessingResult",
    "DatasetPreprocessing",
    "DatasetSchema",
    "DatasetSiteMatrix",
    "KinaseActivityAnalyzer",
    "KinaseActivityResult",
    "KinasePredictionResult",
    "KinaseWorkflow",
    "KinaseWorkflowResult",
    "PhosphoDataset",
    "PhosRPipeline",
    "SiteMatrixResult",
]
