CITATION.md
LICENSE
MANIFEST.in
PhiSpy.py
README.md
README.txt
VERSION
setup.py
PhiSpy.egg-info/PKG-INFO
PhiSpy.egg-info/SOURCES.txt
PhiSpy.egg-info/dependency_links.txt
PhiSpy.egg-info/requires.txt
PhiSpy.egg-info/top_level.txt
PhiSpyModules/__init__.py
PhiSpyModules/classification.py
PhiSpyModules/create_prophage_tbl.py
PhiSpyModules/errors.py
PhiSpyModules/evaluation.py
PhiSpyModules/formatting.py
PhiSpyModules/helper_functions.py
PhiSpyModules/makeTest.py
PhiSpyModules/pathtype.py
PhiSpyModules/protein_functions.py
PhiSpyModules/search_phmms.py
PhiSpyModules/seqio_filter.py
PhiSpyModules/version.py
PhiSpyModules/writers.py
PhiSpyModules/data/phage_functions.txt
PhiSpyModules/data/phage_kmers_all_wohost.txt
PhiSpyModules/data/trainSet_122586.26.txt
PhiSpyModules/data/trainSet_122587.18.txt
PhiSpyModules/data/trainSet_1280.10152.txt
PhiSpyModules/data/trainSet_1351.557.txt
PhiSpyModules/data/trainSet_1367847.3.txt
PhiSpyModules/data/trainSet_147645.106.txt
PhiSpyModules/data/trainSet_1525717.3.txt
PhiSpyModules/data/trainSet_155864.289.txt
PhiSpyModules/data/trainSet_158878.38.txt
PhiSpyModules/data/trainSet_160488.79.txt
PhiSpyModules/data/trainSet_160490.61.txt
PhiSpyModules/data/trainSet_160492.65.txt
PhiSpyModules/data/trainSet_1660154.3.txt
PhiSpyModules/data/trainSet_169963.176.txt
PhiSpyModules/data/trainSet_183190.38.txt
PhiSpyModules/data/trainSet_186103.26.txt
PhiSpyModules/data/trainSet_187410.24.txt
PhiSpyModules/data/trainSet_190486.46.txt
PhiSpyModules/data/trainSet_190650.21.txt
PhiSpyModules/data/trainSet_195102.53.txt
PhiSpyModules/data/trainSet_196620.15.txt
PhiSpyModules/data/trainSet_198214.txt
PhiSpyModules/data/trainSet_198466.10.txt
PhiSpyModules/data/trainSet_199310.168.txt
PhiSpyModules/data/trainSet_206672.37.txt
PhiSpyModules/data/trainSet_208964.452.txt
PhiSpyModules/data/trainSet_211586.69.txt
PhiSpyModules/data/trainSet_212717.31.txt
PhiSpyModules/data/trainSet_214092.200.txt
PhiSpyModules/data/trainSet_220341.87.txt
PhiSpyModules/data/trainSet_224308.360.txt
PhiSpyModules/data/trainSet_224914.79.txt
PhiSpyModules/data/trainSet_226185.9.txt
PhiSpyModules/data/trainSet_243230.96.txt
PhiSpyModules/data/trainSet_243277.252.txt
PhiSpyModules/data/trainSet_266835.41.txt
PhiSpyModules/data/trainSet_267608.42.txt
PhiSpyModules/data/trainSet_272558.23.txt
PhiSpyModules/data/trainSet_272623.42.txt
PhiSpyModules/data/trainSet_272626.22.txt
PhiSpyModules/data/trainSet_272843.53.txt
PhiSpyModules/data/trainSet_318586.5.txt
PhiSpyModules/data/trainSet_32002.17.txt
PhiSpyModules/data/trainSet_411479.31.txt
PhiSpyModules/data/trainSet_71421.45.txt
PhiSpyModules/data/trainSet_83331.121.txt
PhiSpyModules/data/trainSet_83332.460.txt
PhiSpyModules/data/trainSet_83333.998.txt
PhiSpyModules/data/trainSet_83334.295.txt
PhiSpyModules/data/trainSet_Bacillus.txt
PhiSpyModules/data/trainSet_Clostridium.txt
PhiSpyModules/data/trainSet_Ecoli.txt
PhiSpyModules/data/trainSet_Efec.txt
PhiSpyModules/data/trainSet_Listeria.txt
PhiSpyModules/data/trainSet_Mtb.txt
PhiSpyModules/data/trainSet_Nmeningitidis.txt
PhiSpyModules/data/trainSet_Paracoccus.txt
PhiSpyModules/data/trainSet_Pseudomonas.txt
PhiSpyModules/data/trainSet_Saureus.txt
PhiSpyModules/data/trainSet_Spyogenes.txt
PhiSpyModules/data/trainSet_Xfastidiosa.txt
PhiSpyModules/data/trainSet_Ypestis.txt
PhiSpyModules/data/trainSet_genericAll.txt
PhiSpyModules/data/trainingGenome_list.txt
src/repeatFinder.cpp
src/repeatFinder.h
tests/__init__.py
tests/test_seqio_filter.py