Metadata-Version: 2.1
Name: phippery
Version: 1.3.0
Summary: Tools for analyzing PhIP-Seq Data.
Author-email: Jared Galloway <jgallowa@fredhutch.org>, Kevin Sung <ksung@fredhutch.org>
Project-URL: documentation, https://matsengrp.github.io/phippery/
Project-URL: repository, https://github.com/matsengrp/phippery
Keywords: phippery,phipseq,phage,modeling,phip
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: click
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scipy>=1.7.1
Requires-Dist: xarray>=0.19.0
Requires-Dist: statsmodels
Requires-Dist: POT
Requires-Dist: biopython
Provides-Extra: dev
Requires-Dist: setuptools>=58.0; extra == "dev"
Requires-Dist: packaging>=21.0; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-pep8; extra == "dev"
Requires-Dist: pytest-datadir; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: black; extra == "dev"
Requires-Dist: sphinx; extra == "dev"
Requires-Dist: sphinx-rtd-theme; extra == "dev"
Requires-Dist: sphinx-click; extra == "dev"
Requires-Dist: bumpver; extra == "dev"

# Phippery

<p>
  <img src="data/cartoons/Xarray_function.png" width="250">
</p>

[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![Docker Repository on Quay](https://quay.io/repository/hdc-workflows/phippery/status "Docker Repository on Quay")](https://quay.io/repository/hdc-workflows/phippery)
[![build and test](https://github.com/matsengrp/phippery/workflows/build%20and%20test/badge.svg)](https://github.com/matsengrp/phippery/blob/master/.github/workflows/build-and-test.yaml)

A set of functions designed to query an 
[xarray DataSet](http://xarray.pydata.org/en/stable/user-guide/data-structures.html#dataset) 
object formatted to tie enrichment data with 
their respective row & column (peptide & sample) annotations. 

Please see the 
[documentation](https://matsengrp.github.io/phippery/) 
for further details.

## Developer Install

```
# using venv
python -m venv phippery_dev_env
source phippery_dev_env/bin/activate

# install
git clone https://github.com/matsengrp/phippery.git
(cd phippery && pip install -e ".[dev]")
```

