from setuptools import find_packages, setup

setup(
    name="phenoqc",
    version="1.1.1",
    packages=find_packages(where="src"),
    package_dir={"": "src"},
    install_requires=[
        "pandas",
        "jsonschema",
        "requests",
        "plotly",
        "reportlab",
        "streamlit",
        "pyyaml",
        "watchdog",
        "kaleido>=0.1.0",
        "tqdm",
        "Pillow",
        "scikit-learn",
        "fancyimpute",
        "fastjsonschema",
        "pronto",
        "psutil",
        "rapidfuzz",
        "streamlit-aggrid",
        "ucimlrepo",
    ],
    extras_require={
        "test": ["pytest"],
    },
    entry_points={
        "console_scripts": [
            "phenoqc=phenoqc.cli:main",
        ],
    },
    package_data={
        "phenoqc": ["*.json", "*.yaml"],
    },
    include_package_data=True,
    author="Jorge Miguel Ferreira da Silva",
    description="Phenotypic Data Quality Control Toolkit for Genomic Data Infrastructure (GDI)",
    long_description=open("README.md").read(),
    long_description_content_type="text/markdown",
    url="https://github.com/jorgeMFS/PhenoQC",
    classifiers=[
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.9",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    python_requires=">=3.9",
)
