Metadata-Version: 2.1
Name: phenopype
Version: 1.0.5
Summary: a phenotyping pipeline for python
Home-page: https://github.com/mluerig/phenopype
Author: Moritz Luerig
Author-email: moritz.luerig@gmail.com
License: LGPL
Description: # Phenopype: a phenotyping pipeline for Python
        
        **Author:** [Moritz LÃ¼rig](https://luerig.net)<br/>
        **License:** [MIT](https://opensource.org/licenses/MIT)<br/>
        
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        <img src="https://raw.githubusercontent.com/mluerig/phenopype/master/source/phenopype_logo.png">
        
        <div align="justify">
        
        <strong>Phenopype is a high throughput phenotyping pipeline for Python to support biologists in extracting high dimensional phenotypic data from digital images</strong>. The program provides intuitive, high level computer vision functions for image preprocessing, segmentation, and feature extraction. Users can assemble their own function-stacks that can be stored in the  human-readable `yaml`-format along with raw data and results, facilitating high throughput and full data reproducibility. Phenopype can be run from Python or from a Python Integrated Development Environment (IDE), like <i>Spyder</i>. Phenopype is designed to provide robust image analysis workflows that can be implemented with little or no Python experience.<br>
        
        </div>
        
        ## Getting started
        <ol>
        <li><a href="https://mluerig.github.io/phenopype/installation.html">Install Phenopype </a> - via the <i>Python Package Index</i> (PYPI): <code>pip install phenopype</code></li> 
        <li><a href="https://mluerig.github.io/phenopype/tutorial_0.html">Run the Tutorials </a> - Tutorial 1 is for Python beginners, otherwise Tutorial 2 is a good starting point </li>
        <li><a href="https://mluerig.github.io/phenopype/index.html#examples">Check the Examples</a> - Example 1 delineates a typical computer vision workflow </li>
        </ol>
        
        ## Documentation
        Full documentation can be found here: https://mluerig.github.io/phenopype/
        
Platform: UNKNOWN
Description-Content-Type: text/markdown
Provides-Extra: test
