LICENSE
README.md
pyproject.toml
requirements.txt
phenocluster/__init__.py
phenocluster/cache.py
phenocluster/cli.py
phenocluster/profiles.py
phenocluster.egg-info/PKG-INFO
phenocluster.egg-info/SOURCES.txt
phenocluster.egg-info/dependency_links.txt
phenocluster.egg-info/entry_points.txt
phenocluster.egg-info/requires.txt
phenocluster.egg-info/top_level.txt
phenocluster/config/__init__.py
phenocluster/config/analysis.py
phenocluster/config/base.py
phenocluster/config/data.py
phenocluster/config/model.py
phenocluster/config/multistate.py
phenocluster/config/output.py
phenocluster/core/__init__.py
phenocluster/core/exceptions.py
phenocluster/core/types.py
phenocluster/data/__init__.py
phenocluster/data/encoder.py
phenocluster/data/imputer.py
phenocluster/data/outlier_handler.py
phenocluster/data/preprocessor.py
phenocluster/data/scaler.py
phenocluster/data/splitter.py
phenocluster/evaluation/__init__.py
phenocluster/evaluation/cluster_statistics.py
phenocluster/evaluation/external_validation.py
phenocluster/evaluation/feature_characterization.py
phenocluster/evaluation/metrics.py
phenocluster/evaluation/outcome_analysis.py
phenocluster/evaluation/stability.py
phenocluster/evaluation/stats_utils.py
phenocluster/evaluation/survival.py
phenocluster/evaluation/data_quality/__init__.py
phenocluster/evaluation/data_quality/assessor.py
phenocluster/evaluation/data_quality/figures.py
phenocluster/evaluation/data_quality/mcar.py
phenocluster/evaluation/multistate/__init__.py
phenocluster/evaluation/multistate/analyzer.py
phenocluster/evaluation/multistate/hazard_ratios.py
phenocluster/evaluation/multistate/pathways.py
phenocluster/evaluation/multistate/trajectory.py
phenocluster/evaluation/multistate/transition_hazards.py
phenocluster/evaluation/multistate/types.py
phenocluster/feature_selection/__init__.py
phenocluster/feature_selection/base.py
phenocluster/feature_selection/correlation.py
phenocluster/feature_selection/lasso.py
phenocluster/feature_selection/mixed_selector.py
phenocluster/feature_selection/mutual_info.py
phenocluster/feature_selection/variance.py
phenocluster/model_selection/__init__.py
phenocluster/model_selection/grid_search.py
phenocluster/model_selection/scorers.py
phenocluster/pipeline/__init__.py
phenocluster/pipeline/context.py
phenocluster/pipeline/orchestrator.py
phenocluster/pipeline/quality.py
phenocluster/pipeline/warnings.py
phenocluster/pipeline/stages/__init__.py
phenocluster/pipeline/stages/analysis.py
phenocluster/pipeline/stages/evaluation.py
phenocluster/pipeline/stages/feature_selection.py
phenocluster/pipeline/stages/finalization.py
phenocluster/pipeline/stages/preprocessing.py
phenocluster/pipeline/stages/training.py
phenocluster/utils/__init__.py
phenocluster/utils/logging.py
phenocluster/utils/results_io.py
phenocluster/utils/report/__init__.py
phenocluster/utils/report/_css.py
phenocluster/utils/report/_helpers.py
phenocluster/utils/report/generator.py
phenocluster/utils/report/sections/__init__.py
phenocluster/utils/report/sections/classification_quality.py
phenocluster/utils/report/sections/clusters.py
phenocluster/utils/report/sections/data_quality.py
phenocluster/utils/report/sections/external_validation.py
phenocluster/utils/report/sections/feature_importance.py
phenocluster/utils/report/sections/header.py
phenocluster/utils/report/sections/methods.py
phenocluster/utils/report/sections/model_selection.py
phenocluster/utils/report/sections/multistate.py
phenocluster/utils/report/sections/outcomes.py
phenocluster/utils/report/sections/stability.py
phenocluster/utils/report/sections/summary.py
phenocluster/utils/report/sections/survival.py
phenocluster/utils/report/sections/validation.py
phenocluster/visualization/__init__.py
phenocluster/visualization/_base.py
phenocluster/visualization/_cluster_distribution.py
phenocluster/visualization/_cluster_heatmap.py
phenocluster/visualization/_cluster_quality.py
phenocluster/visualization/_multistate.py
phenocluster/visualization/_outcome.py
phenocluster/visualization/_survival.py
phenocluster/visualization/plots.py