Metadata-Version: 2.1
Name: phage-commander
Version: 0.4.5.dev0
Summary: A graphical tool for predicting genes on phage DNA sequences
Home-page: https://github.com/mlazeroff/PhageCommander
Author: Matthew Lazeroff
Author-email: lazeroff@unlv.nevada.edu
License: GPL-3
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: MacOS
Classifier: Operating System :: Unix
Description-Content-Type: text/markdown
Requires-Dist: requests
Requires-Dist: bs4
Requires-Dist: openpyxl
Requires-Dist: pyqt5
Requires-Dist: biopython
Requires-Dist: ruamel.yaml

# Phage Commander 
A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.
## Overview
Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.

The following gene-encoding prediction tools are currently supported:
* Glimmer
* Genemark
* Genemark Hmm
* GenemarkS
* GenemarkS2
* Genemark Heuristic
* Prodigal
* RAST
* Metagene

Supported exporting formats:
* Genbank
* Excel

## Getting Started
### Prerequisites
* Python 3.6+
### Installing
Install via pip
```angular2
pip install phage-commander
```
Install via pip and git
```angular2html
pip install git+https://github.com/mlazeroff/PhageCommander
```

### Running
```shell script
# on Windows
phagecom.exe
```
```shell script
# on MacOS/Linux
phagecom
```
**Note:** The pip "Scripts" directory should be included your PATH variable.

## Author
* **Matthew Lazeroff**
## License
This project is licensed under the GNU GPLv3


