.gitignore
pyproject.toml
data/ftrs_test_data.ftrs
data/maxquant_test_data.txt
docs/Makefile
docs/conf.py
docs/contributing.md
docs/copying.md
docs/data_dictionary.md
docs/index.rst
docs/installation.md
docs/introduction.md
docs/make.bat
docs/pglang.md
docs/smithereens.md
docs/svelte.md
docs/usage.md
docs/_static/pglang.html
docs/img/fgbulk.png
docs/img/fgsingle.png
docs/img/fraggen.png
docs/img/full_ui.png
docs/img/masscalc.png
docs/img/mcbulkgo.png
docs/img/mcerror.png
docs/img/mcsingle.png
docs/img/pglang.png
docs/img/railroad.png
docs/img/templates.png
pgfinder/__init__.py
pgfinder/default_config.yaml
pgfinder/errors.py
pgfinder/find_pg.py
pgfinder/matching.py
pgfinder/pgio.py
pgfinder/utils.py
pgfinder/validation.py
pgfinder.egg-info/PKG-INFO
pgfinder.egg-info/SOURCES.txt
pgfinder.egg-info/dependency_links.txt
pgfinder.egg-info/entry_points.txt
pgfinder.egg-info/requires.txt
pgfinder.egg-info/top_level.txt
pgfinder/config/allowed_modifications.txt
pgfinder/config/columns.yaml
pgfinder/config/parameters.yaml
pgfinder/gui/__init__.py
pgfinder/gui/internal.py
pgfinder/gui/shim.py
pgfinder/logs/__init__.py
pgfinder/logs/logs.py
pgfinder/masses/c_diff_monomers_complex.csv
pgfinder/masses/c_diff_monomers_non_redundant.csv
pgfinder/masses/c_diff_monomers_simple.csv
pgfinder/masses/e_coli_monomers_complex.csv
pgfinder/masses/e_coli_monomers_non_redundant.csv
pgfinder/masses/e_coli_monomers_simple.csv
pgfinder/masses/index.json
tests/__init__.py
tests/conftest.py
tests/test_matching.py
tests/test_pgio.py
tests/test_regression.py
tests/test_utils.py
tests/test_validation.py
tests/_regtest_outputs/test_regression.test_matching_ftrs_baseline[ftrs_test_data_3.11.ftrs].out
tests/_regtest_outputs/test_regression.test_matching_ftrs_baseline[ftrs_test_data_5.2.ftrs].out
tests/_regtest_outputs/test_regression.test_matching_mq_baseline.out
tests/resources/consolidated.csv
tests/resources/long_results.csv
tests/resources/test.yaml
tests/resources/unconsolidated.csv
tests/resources/wide_results.csv
tests/resources/data/ftrs_test_data_3.11.ftrs
tests/resources/data/ftrs_test_data_5.2.ftrs
tests/resources/data/maxquant_test_data.txt
tests/resources/data/maxquant_test_data_no_match.txt
tests/resources/data/masses/c_diff_monomer_masses.csv
tests/resources/data/masses/e_coli_monomer_masses.csv