LICENSE
MANIFEST.in
README.md
setup.py
pg_sui.egg-info/PKG-INFO
pg_sui.egg-info/SOURCES.txt
pg_sui.egg-info/dependency_links.txt
pg_sui.egg-info/requires.txt
pg_sui.egg-info/top_level.txt
pgsui/__init__.py
pgsui/pg_sui.py
pgsui/data_processing/__init__.py
pgsui/data_processing/transformers.py
pgsui/example_data/__init__.py
pgsui/example_data/phylip_files/__init__.py
pgsui/example_data/phylip_files/test.phy
pgsui/example_data/phylip_files/test_n10.phy
pgsui/example_data/phylip_files/test_n100.phy
pgsui/example_data/phylip_files/test_n2.phy
pgsui/example_data/phylip_files/test_n500.phy
pgsui/example_data/popmaps/__init__.py
pgsui/example_data/popmaps/test.popmap
pgsui/example_data/structure_files/__init__.py
pgsui/example_data/structure_files/test.nopops.1row.10sites.str
pgsui/example_data/structure_files/test.nopops.2row.100sites.str
pgsui/example_data/structure_files/test.nopops.2row.10sites.str
pgsui/example_data/structure_files/test.nopops.2row.30sites.str
pgsui/example_data/structure_files/test.nopops.2row.allsites.str
pgsui/example_data/structure_files/test.pops.1row.10sites.str
pgsui/example_data/structure_files/test.pops.2row.10sites.str
pgsui/example_data/structure_files/test.pops.2row.allsites.str
pgsui/example_data/trees/__init__.py
pgsui/example_data/trees/test.iqtree
pgsui/example_data/trees/test.qmat
pgsui/example_data/trees/test.rate
pgsui/example_data/trees/test.tre
pgsui/example_data/trees/test_n10.rate
pgsui/example_data/trees/test_n100.rate
pgsui/example_data/trees/test_n500.rate
pgsui/example_data/trees/test_siterates.txt
pgsui/example_data/trees/test_siterates_n10.txt
pgsui/example_data/trees/test_siterates_n100.txt
pgsui/example_data/trees/test_siterates_n500.txt
pgsui/example_data/vcf_files/test.vcf
pgsui/example_data/vcf_files/test.vcf.gz
pgsui/example_data/vcf_files/test.vcf.gz.tbi
pgsui/impute/__init__.py
pgsui/impute/estimators.py
pgsui/impute/impute.py
pgsui/impute/simple_imputers.py
pgsui/impute/supervised/__init__.py
pgsui/impute/supervised/iterative_imputer_fixedparams.py
pgsui/impute/supervised/iterative_imputer_gridsearch.py
pgsui/impute/unsupervised/__init__.py
pgsui/impute/unsupervised/callbacks.py
pgsui/impute/unsupervised/keras_classifiers.py
pgsui/impute/unsupervised/neural_network_imputers.py
pgsui/impute/unsupervised/neural_network_methods.py
pgsui/impute/unsupervised/models/__init__.py
pgsui/impute/unsupervised/models/autoencoder_model.py
pgsui/impute/unsupervised/models/nlpca_model.py
pgsui/impute/unsupervised/models/ubp_model.py
pgsui/impute/unsupervised/models/vae_model.py
pgsui/impute/unsupervised/models/in_development/__init__.py
pgsui/impute/unsupervised/models/in_development/cnn_model.py
pgsui/utils/__init__.py
pgsui/utils/misc.py
pgsui/utils/plotting.py
pgsui/utils/scorers.py
pgsui/utils/sequence_tools.py
simulation/__init__.py
simulation/sim_benchmarks.py
simulation/sim_treeparams.py
test/__init__.py
test/pg_sui_simtest.py
test/pg_sui_testing.py
test/test.py
test/test_pgsui.py
test/test_tkc.py