Metadata-Version: 2.1
Name: pfmongo
Version: 0.9.97
Summary: A mongodb (portable) "pf" client
Home-page: https://github.com/FNNDSC/persair
Author: FNNDSC
Author-email: dev@babymri.org
License: MIT
License-File: LICENSE

pfmongo
=======

.. image:: https://badge.fury.io/py/pfmongo.svg
    :target: https://badge.fury.io/py/pfmongo

.. image:: https://travis-ci.org/FNNDSC/pfmongo.svg?branch=master
    :target: https://travis-ci.org/FNNDSC/pfmongo

.. image:: https://img.shields.io/badge/python-3.5%2B-blue.svg
    :target: https://badge.fury.io/py/pfmongo

.. contents:: Table of Contents


Quick Overview
--------------

``pfmongo`` is a python client/module (CLI and API) for simplifying the interaction with a MongoDB. The module provides some *idiosyncratic* abstractions that are nonetheless hoped to be logically straightforward. The repository includes a ``docker-compose.yml`` that allows for easy instantiation of the MongoDB infrastructure.

Warning, Will Robinson!
-----------------------

If you wish to use ``pfmongo`` on your own computer, you do need to note these prerequisites:

``docker`` and ``docker-compose``
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Since ``pfmongo`` interacts with a MongoDB, the easiest mechanism to deploy this database is via ``docker-compose`` and hence ``docker``. Installation of these is beyond the scope of this document, but should be straightforward enough. Google is your friend in that quest.


Overview
--------

``pfmongo`` provides a somewhat opinionated abstraction for interacting with a MongoDB.


Installation
------------

Using ``PyPI``
~~~~~~~~~~~~~~

The best method of installing this script and all of its dependencies is by fetching it from PyPI using `a python virtual environment <https://medium.com/swlh/how-to-setup-your-python-projects-1eb5108086b1>`_.

.. code:: bash

        pip3 install pfmongo

Using CLI
~~~~~~~~~

Alternatively, from a cloned version of the repository:

.. code:: bash

        pip3 install -r requirements.txt -U ./

or for development purposes

.. code:: bash

        pip3 install -r requirements.txt -e ./


Running
-------

Ecosystem
~~~~~~~~~

Assuming you have `docker` and `docker-compose` on your system, do

.. code:: bash

    docker-compose up -d

Environment
~~~~~~~~~~~

Several environment variables need to be set prior to using ``pfmongo``:

Linux
^^^^^

.. code:: bash


    export MD_URI=mongodb://localhost:27017 && export MD_USERNAME=admin && export MD_PASSWORD=admin && export MD_SESSIONUSER=rudolph

Windows
^^^^^^^

.. code:: bash

    $env:MD_USERNAME=admin
    $env:MD_PASSWORD=admin
    $env:MD_URI=mongodb://localhost:27017
    $env:MD_SESSIONUER=rudolph


Command line arguments
----------------------

.. code:: console

    pfmongo --help


Examples
--------

.. code:: bash

  alias mdb='pfmongo'
  mdb database connect PACSDCM
  mdb collection connect MRN
  mdb document add --file examples/lld.json --id lld.json


*-30-*
