LICENSE
README.md
pyproject.toml
setup.py
perturb_tools/__init__.py
perturb_tools.egg-info/PKG-INFO
perturb_tools.egg-info/SOURCES.txt
perturb_tools.egg-info/dependency_links.txt
perturb_tools.egg-info/requires.txt
perturb_tools.egg-info/top_level.txt
perturb_tools/_arithmetic/__init__.py
perturb_tools/_arithmetic/_funcs/_SequenceManipulation.py
perturb_tools/_arithmetic/_funcs/__init__.py
perturb_tools/_arithmetic/_funcs/_log_fold_change.py
perturb_tools/_arithmetic/_funcs/_LogFoldChange/_LogFoldChange_Module.py
perturb_tools/_arithmetic/_funcs/_LogFoldChange/__init__.py
perturb_tools/_arithmetic/_funcs/_LogFoldChange/_calculate_log_fold_change.py
perturb_tools/_experimental_design/__init__.py
perturb_tools/_experimental_design/_coding/__init__.py
perturb_tools/_experimental_design/_coding/_funcs/__init__.py
perturb_tools/_experimental_design/_coding/_funcs/_plot_CDS.py
perturb_tools/_experimental_design/_funcs/__init__.py
perturb_tools/_experimental_design/_general/_GTF_Module.py
perturb_tools/_experimental_design/_general/_TargetModule.py
perturb_tools/_experimental_design/_general/__init__.py
perturb_tools/_experimental_design/_general/_add_region_labels.py
perturb_tools/_experimental_design/_general/_add_sgRNA_context.py
perturb_tools/_experimental_design/_general/_annotate_guide_biochemistry.py
perturb_tools/_experimental_design/_general/_annotate_protospacer.py
perturb_tools/_experimental_design/_general/_get_chromosome_sequence.py
perturb_tools/_experimental_design/_general/_get_screen_target_features.py
perturb_tools/_experimental_design/_general/_identify_overlapping_fragments.py
perturb_tools/_experimental_design/_general/_make_guide_library_df.py
perturb_tools/_experimental_design/_general/_query_region_for_PAM.py
perturb_tools/_experimental_design/_general/_scan_for_BsmbI.py
perturb_tools/_experimental_design/_general/_widen_regions.py
perturb_tools/_external_tools/__init__.py
perturb_tools/_framework/_ScreenModule.py
perturb_tools/_framework/__init__.py
perturb_tools/_framework/_supporting_functions/__init__.py
perturb_tools/_framework/_supporting_functions/_print_screen_object.py
perturb_tools/_framework/_supporting_functions/_read_write_poolQ.py
perturb_tools/_framework/_supporting_functions/_guides/_GuideAnnotationModule.py
perturb_tools/_framework/_supporting_functions/_guides/__init__.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/__init__.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/_add_context_sequence_to_gene_dict.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/_add_guide_target_metadata.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/_annotate_guide_position.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/_annotate_protospacer.py
perturb_tools/_framework/_supporting_functions/_guides/_supporting_functions/_create_gene_dict.py
perturb_tools/_normalization/__init__.py
perturb_tools/_normalization/_funcs/__init__.py
perturb_tools/_normalization/_funcs/_read_count_norm.py
perturb_tools/_plotting/__init__.py
perturb_tools/_plotting/_funcs/__init__.py
perturb_tools/_plotting/_funcs/_get_default_matplotlib_figure_width_height.py
perturb_tools/_plotting/_funcs/_plot_correlation_heatmap.py
perturb_tools/_plotting/_funcs/_plot_gene_exon.py
perturb_tools/_plotting/_funcs/_plot_guide_enrichment.py
perturb_tools/_plotting/_funcs/_plot_rep_consistency.py
perturb_tools/_plotting/_funcs/_plot_stats.py
perturb_tools/_plotting/_funcs/_set_matplotlib_rc_params.py
perturb_tools/_qc/__init__.py
perturb_tools/_qc/qc.py
perturb_tools/_readwrite/__init__.py
perturb_tools/_readwrite/_funcs/__init__.py
perturb_tools/_readwrite/_funcs/_check_fix_file_extension.py
perturb_tools/_readwrite/_funcs/_read_screen_from_PoolQ.py
perturb_tools/_readwrite/_funcs/_read_screen_from_csvs.py
perturb_tools/_readwrite/_funcs/_write_experiment_report_to_excel.py
perturb_tools/_readwrite/_funcs/_write_screen_to_csv.py
perturb_tools/_readwrite/_funcs/_write_screen_to_excel.py
perturb_tools/_tools/__init__.py
perturb_tools/_utilities/__init__.py
perturb_tools/_utilities/_funcs/_FileHandler.py
perturb_tools/_utilities/_funcs/_SequenceManipulation.py
perturb_tools/_utilities/_funcs/__init__.py
perturb_tools/_utilities/_funcs/_fetch_chromosome_sequence.py
perturb_tools/_utilities/_funcs/_flexible_mkdir.py
perturb_tools/_utilities/_funcs/_get_chromosome_sequence.py
perturb_tools/_utilities/_funcs/_get_gene_exons.py
perturb_tools/_utilities/_funcs/_glob_dict.py
perturb_tools/_utilities/_funcs/_scan_sequence_for_motif.py
perturb_tools/_utilities/_funcs/_update_dict.py
tests/test_screen.py