Peptacular Documentation
========================

A Python package for peptide sequence analysis built around ProForma 2.0 notation.

Peptacular provides tools for parsing ProForma sequences, calculating masses, generating fragments, 
predicting isotopic patterns, and analyzing physicochemical properties. Built with performance in mind, 
it supports parallel processing and lazy loading for efficient batch operations.

Contents
========

.. toctree::
   :maxdepth: 2
   :caption: User Guide:

   quickstart
   features
   proforma_compliance
   examples
   masses

.. toctree::
   :maxdepth: 2
   :caption: API Reference:

   api

Indices and Tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`