CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
requirements_extra.txt
setup.cfg
setup.py
pept/__init__.py
pept/__version__.py
pept.egg-info/PKG-INFO
pept.egg-info/SOURCES.txt
pept.egg-info/dependency_links.txt
pept.egg-info/requires.txt
pept.egg-info/top_level.txt
pept/base/__init__.py
pept/base/iterable_samples.py
pept/base/line_data.py
pept/base/pipelines.py
pept/base/pixels.py
pept/base/point_data.py
pept/base/sampling_extensions.c
pept/base/sampling_extensions.pyx
pept/base/utilities.py
pept/base/voxels.py
pept/plots/__init__.py
pept/plots/plotly_grapher.py
pept/plots/plotly_grapher2d.py
pept/processing/__init__.py
pept/processing/grids.py
pept/processing/mixing.py
pept/scanners/__init__.py
pept/scanners/modular_camera/__init__.py
pept/scanners/modular_camera/modular_camera.py
pept/scanners/modular_camera/extensions/get_pept_event.c
pept/scanners/modular_camera/extensions/get_pept_event.pyx
pept/scanners/modular_camera/extensions/get_pept_event_ext.c
pept/scanners/modular_camera/extensions/get_pept_event_ext.h
pept/scanners/parallel_screens/__init__.py
pept/scanners/parallel_screens/adac_forte.py
pept/scanners/parallel_screens/parallel_screens.py
pept/scanners/parallel_screens/extensions/__init__.py
pept/scanners/parallel_screens/extensions/binary_converter.c
pept/scanners/parallel_screens/extensions/binary_converter.pyx
pept/scanners/parallel_screens/extensions/binary_converter_ext.c
pept/scanners/parallel_screens/extensions/binary_converter_ext.h
pept/simulation/__init__.py
pept/simulation/peptsim.py
pept/tracking/__init__.py
pept/tracking/post.py
pept/tracking/space_transformers.py
pept/tracking/transformers.py
pept/tracking/birmingham_method/__init__.py
pept/tracking/birmingham_method/birmingham_method.py
pept/tracking/birmingham_method/extensions/birmingham_method.c
pept/tracking/birmingham_method/extensions/birmingham_method.pyx
pept/tracking/birmingham_method/extensions/birmingham_method_ext.c
pept/tracking/birmingham_method/extensions/birmingham_method_ext.h
pept/tracking/fpi/PeptStructures.hpp
pept/tracking/fpi/__init__.py
pept/tracking/fpi/calcPosFPI.hpp
pept/tracking/fpi/fpi.py
pept/tracking/fpi/fpi_ext.cpp
pept/tracking/fpi/fpi_ext.pyx
pept/tracking/peptml/__init__.py
pept/tracking/peptml/cutpoints.py
pept/tracking/peptml/minpoints.py
pept/tracking/peptml/peptml.py
pept/tracking/tof/__init__.py
pept/tracking/tof/base.py
pept/tracking/tof/cutpoints_tof.c
pept/tracking/tof/cutpoints_tof.pyx
pept/tracking/trajectory_separation/__init__.py
pept/tracking/trajectory_separation/distance_matrix_reachable.c
pept/tracking/trajectory_separation/distance_matrix_reachable.pyx
pept/tracking/trajectory_separation/trajectory_separation.py
pept/utilities/__init__.py
pept/utilities/cutpoints/__init__.py
pept/utilities/cutpoints/find_cutpoints.c
pept/utilities/cutpoints/find_cutpoints.pyx
pept/utilities/cutpoints/find_minpoints.c
pept/utilities/cutpoints/find_minpoints.pyx
pept/utilities/cutpoints/find_minpoints_ext.c
pept/utilities/cutpoints/find_minpoints_ext.h
pept/utilities/misc/__init__.py
pept/utilities/misc/aggregate.py
pept/utilities/misc/read_csv.py
pept/utilities/parallel/__init__.py
pept/utilities/parallel/parallel_map.py
pept/utilities/traverse/__init__.py
pept/utilities/traverse/traverse2d.c
pept/utilities/traverse/traverse2d.pyx
pept/utilities/traverse/traverse3d.c
pept/utilities/traverse/traverse3d.pyx