ChangeLog
MANIFEST.in
setup.py
PePr/PePr.py
PePr/__init__.py
PePr/classDef.py
PePr/logConfig.py
PePr/misc.py
PePr/optParser.py
PePr/prepareData.py
PePr/sigTests.py
PePr.egg-info/PKG-INFO
PePr.egg-info/SOURCES.txt
PePr.egg-info/dependency_links.txt
PePr.egg-info/entry_points.txt
PePr.egg-info/requires.txt
PePr.egg-info/top_level.txt
PePr/data/chip_rep1.bed
PePr/data/chip_rep2.bed
PePr/data/example_command
PePr/data/input_rep1.bed
PePr/data/input_rep2.bed
PePr/data/test__PePr_peaks.bed
PePr/post_processing/__init__.py
PePr/post_processing/post_process_PePr.py
PePr/pre_processing/__init__.py
PePr/pre_processing/cal_normalization.py
PePr/pre_processing/estimate_shiftSize.py
PePr/pre_processing/fileParser.py
PePr/pre_processing/initialize.py
PePr/pre_processing/preProcess.py
PePr/pre_processing/shiftSize.py
PePr/pre_processing/windowSize.py
PePr/utilities/__init__.py
PePr/utilities/cal_duplication_rate.py
PePr/utilities/cal_max_duplicates_to_keep.py
PePr/utilities/find_peak_mode.py